Plant FIBer expression Database

Lus10030434 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G46520 407 / 1e-132 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030241
[exp]
519 / 4e-176 AT2G46520 1438 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1)
Lus10026635
[exp]
337 / 1e-108 AT2G46520 363 / 3e-113 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1)
Lus10005968
[exp]
262 / 1e-79 AT2G46520 1073 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1)
Lus10005969
[exp]
183 / 3e-55 AT2G46520 250 / 2e-77 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1)
Lus10030423
[exp]
92 / 1e-19 AT2G46520 398 / 6e-129 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G172700
[exp]
454 / 8e-151 AT2G46520 1421 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1)
Potri.014G100000
[exp]
449 / 5e-149 AT2G46520 1464 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF08506 Cse1 Cse1
CL0020 TPR PF03810 IBN_N Importin-beta N-terminal domain
Representative CDS sequence
>Lus10030434 pacid=23140604 polypeptide=Lus10030434 locus=Lus10030434.g ID=Lus10030434.BGIv1.0 annot-version=v1.0
ATGGATTTGAGCCCTTATTTTCTCGGCAAGTGTTTCATCGGCACATTCTCCGCAGCTCGGGAGCCCCGCAAGGCGGCCGAGGACAGCCTCAAAGCAGCGG
CGAACGCTCCCAACTACGCGGTCGCCGTTCTCAACTTGATCGGTATGCCGATCTTCGATGAGCAGATCCGTCAAGCGGCGGCTGTCAACTTGAAGAAGCA
CATCAAGCTGCGATGGGCGCCGGAAAAGTATTCCGAGTTGAATCCAATCTCTGACGACGAGAAGAAGCAGATAGAGATCCTAATCGTCCCTCTCATGCTC
TCGTCGTCTTCTCCTGGCATCCATTCGCAGCTTAGTGAAGCCCTTACTGTGATTGACGAACACAATTTCTCCAGCACCCTGTGGGAATCTTTGCTCCTTG
AACTCACCGGCAATCTCCATGCTGCATCGCAGGGCACCAATTATGCCTCCATCAATGGTATTCTCAGGACGGCTAATTCAATCTTTAAAGGGTTCCGGGA
GCAGCGGGAGCATCTGGTGCCCGAGGATTACTTTGAGTTGAGACTTTGTCTTGATAGATTTTCTGCTTCGTTGCTTTATGTGTTCCGCACAACCGCGGCT
TTTATAGACGCCGCTTGTGCAGTTAGCTCTGGGTTCGAGACGTTAAGACCCTTGTTCGAGTCTCAGAGGTTGTGTTGTAGTATCTTTTACTCGTTGTCTT
TGATTCGGGAATTGCCTGGCTTGTTTAAGGATGATATGAGGGAATGGCTGACAGAGTTTAAAAAGTACTTGTCCTCAAGTTATCCTAGTGGCCCTGGACT
TGCTGTTCCAGATGATCTTAGAGCTGCTGTTTGTGAGAATATTAGTATTTACATGGAAGAGTTCCAACCCTACTTAAATGATGACTTGAATGATGTTGCG
CTTGCTGGTGTTCGGAGTCTGTTGGTCAATAATGTATCATCGTCTCAGAATGATGCTAGCCGTGATAGGTTGGCTGTTTCTGCTATGGTATTCTTAACTG
CAGTGAGTAAGAGTGTGCTCCGCAGTTTGTTTAGAGAGGATGGTATATTGCTGCAAATATGTCAGAATTTTGTGATTCCCAATGTTCGTTTGAGAGACGA
CGATGAGGAGCTGTTTGAGATGAATTACATGGAGTATATCAGGAGGGATATGGCGGAGGAGTTGGAAGATACTACGAGAAGGAGGAGGGTTGCTTGTAAG
TTGCTCAAGGGGATTGCTGCAAATTATAAGGACCAAGTGACTAGTGTAGTTTCTGCTCAGATACAAAATTTGTTGAACTCTTATGCTTCAAATCCGGCAG
AAAATTGGAAGGATAAGGAATGTGCAATACATCTAGTGGTGTACCTTGCCAGGAAGAAATCTCTAGGAGGAGGCGTAGTTGATGTTGAAGCTTCTTTGCT
TCAGTCATAG
AA sequence
>Lus10030434 pacid=23140604 polypeptide=Lus10030434 locus=Lus10030434.g ID=Lus10030434.BGIv1.0 annot-version=v1.0
MDLSPYFLGKCFIGTFSAAREPRKAAEDSLKAAANAPNYAVAVLNLIGMPIFDEQIRQAAAVNLKKHIKLRWAPEKYSELNPISDDEKKQIEILIVPLML
SSSSPGIHSQLSEALTVIDEHNFSSTLWESLLLELTGNLHAASQGTNYASINGILRTANSIFKGFREQREHLVPEDYFELRLCLDRFSASLLYVFRTTAA
FIDAACAVSSGFETLRPLFESQRLCCSIFYSLSLIRELPGLFKDDMREWLTEFKKYLSSSYPSGPGLAVPDDLRAAVCENISIYMEEFQPYLNDDLNDVA
LAGVRSLLVNNVSSSQNDASRDRLAVSAMVFLTAVSKSVLRSLFREDGILLQICQNFVIPNVRLRDDDEELFEMNYMEYIRRDMAEELEDTTRRRRVACK
LLKGIAANYKDQVTSVVSAQIQNLLNSYASNPAENWKDKECAIHLVVYLARKKSLGGGVVDVEASLLQS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G46520 cellular apoptosis susceptibil... Lus10030434
[exp]
0 1
Lus10033157
[exp]
5.0 0.7268
Lus10010597
[exp]
14.8 0.7026
AT5G52020 AP2_ERF Integrase-type DNA-binding sup... Lus10017830
[exp]
16.2 0.6643
AT2G26150 HSF ATHSFA2 heat shock transcription facto... Lus10027627
[exp]
19.0 0.6811
AT3G22530 unknown protein Lus10000009
[exp]
19.4 0.6720
AT2G45910 U-box domain-containing protei... Lus10040825
[exp]
19.8 0.7015
AT2G29970 Double Clp-N motif-containing ... Lus10038320
[exp]
23.8 0.6856
AT5G40400 Pentatricopeptide repeat (PPR)... Lus10022262
[exp]
27.1 0.6419
AT2G40860 protein kinase family protein ... Lus10024475
[exp]
31.7 0.6549
AT5G45030 Trypsin family protein (.1.2) Lus10036208
[exp]
35.8 0.6644

Lus10030434 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.