Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14000 721 / 0 VIK VH1-interacting kinase (.1) AT3G58760 290 / 8e-94 Integrin-linked protein kinase family (.1) AT4G18950 283 / 4e-91 Integrin-linked protein kinase family (.1) AT2G31800 246 / 9e-77 Integrin-linked protein kinase family (.1) AT2G43850 238 / 1e-73 Integrin-linked protein kinase family (.1.2) AT3G59830 229 / 2e-70 Integrin-linked protein kinase family (.1) AT2G17700 182 / 1e-51 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT4G35780 181 / 3e-51 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) AT4G38470 179 / 1e-50 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT4G31170 172 / 6e-49 Protein kinase superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026626 [exp] 807 / 0 AT1G14000 748 / 0.0 VH1-interacting kinase (.1) Lus10029277 [exp] 285 / 2e-91 AT4G18950 601 / 0.0 Integrin-linked protein kinase family (.1) Lus10030387 [exp] 281 / 7e-91 AT3G58760 315 / 2e-103 Integrin-linked protein kinase family (.1) Lus10037851 [exp] 268 / 9e-86 AT3G58760 305 / 2e-99 Integrin-linked protein kinase family (.1) Lus10008350 [exp] 208 / 4e-61 AT2G31800 753 / 0.0 Integrin-linked protein kinase family (.1) Lus10027107 [exp] 194 / 1e-55 AT2G31800 709 / 0.0 Integrin-linked protein kinase family (.1) Lus10022653 [exp] 184 / 5e-53 AT4G38470 673 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10028590 [exp] 185 / 2e-52 AT4G35780 506 / 9e-175 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10012517 [exp] 185 / 2e-52 AT4G35780 754 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G090800 [exp] 741 / 0 AT1G14000 743 / 0.0 VH1-interacting kinase (.1) Potri.010G164500 [exp] 741 / 0 AT1G14000 757 / 0.0 VH1-interacting kinase (.1) Potri.004G064400 [exp] 288 / 3e-93 AT4G18950 632 / 0.0 Integrin-linked protein kinase family (.1) Potri.002G158950 [exp] 280 / 3e-90 AT4G18950 305 / 1e-99 Integrin-linked protein kinase family (.1) Potri.007G142100 [exp] 241 / 2e-74 AT2G43850 726 / 0.0 Integrin-linked protein kinase family (.1.2) Potri.017G007800 [exp] 236 / 5e-73 AT2G31800 751 / 0.0 Integrin-linked protein kinase family (.1) Potri.004G179457 [exp] 186 / 2e-54 AT4G38470 654 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G190200 [exp] 188 / 5e-54 AT4G38470 500 / 2e-172 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179100 [exp] 186 / 5e-54 AT4G35780 612 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179514 [exp] 186 / 3e-53 AT4G38470 786 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10030435 pacid=23140641 polypeptide=Lus10030435 locus=Lus10030435.g ID=Lus10030435.BGIv1.0 annot-version=v1.0 ATGAGCTCCGGTTCCTCCTCCGCCGGCGGCGGCGCGTGGCCGGCCGAAGACAAGCAGAAGGAGAAGGCGAGAGTCAGCAGGACGTCGATGATACTGTGGC ACGCTCACCAGAACGACGTCGCGGCCGTGCGGAAGCTCCTCGAGGAGGATCCGTCTCTCGTCATGGCTAGGGATTACGACAATCGGACTCCCTTACACGT CGCGTCTCTCCATGGATGGATCGACGTTGCTACTTGCTTGATCGAGTTCGGCGCCGATGTCAACGCCCAGGATCGCTGGAAGAACACGCCCTTAGCGGAT GCAGAAGGAGCTAAGAAGTCTAACATGATTGAGCTGCTGAAGTCGTATGGCGGTTTGTCCTTTGGACAAAATGGTAGCCACTTTGAACCAAAGCCTGTTC CACCACCTCTACCGAACAAGTGTGACTGGGAAATTGATCCGTCTGAGCTTGACTTCTCCAACTCTTCTATGATTGGGAAGGGATCCTTTGGTGAGATTCT GAAAGCATGTTGGCGGGGAACACCAGTTGCAGTTAAACGTATTCTGCCATCCCTTTCAGATGATAGACTGGTTATCCAGGACTTCAGACATGAAGTTAAT TTGCTAGTGAAGCTTCGTCACCCTAACATAGTCCAGTTTCTTGGAGCTGTTACTGAGAAGAAGCCCCTCATGTTAATCACAGAGTATCTTAGAGGGGGTG ATCTTCACCAGCATCTCAAGGAAAAAGGTGCCCTTAGTCCCGCCACAGCCATCAACTTCGCAATGGACATTGCCAGAGGCATGGCATATATGCATAATGA GCCGAATGTCATCATTCATAGAGACCTGAAACCAAGGAACGTTCTTTTGGTCAACTCCAGTGCAGACCACTTGAAAGTCGGAGATTTCGGACTAAGCAAG CTCATCAGAGTTCAGAACTCTCATGATGTATACAAAATGACTGGCGAGACAGGAAGTTATCGGTACATGGCTCCTGAAGTTTTCAAGCACCGGAAATACG ATAAGAAGGTCGACGTCTTCTCTTTCGCCATGATACTCTACGAGATGATGGAAGGAGAACCGCCACTCGCAAACTACGAGCCATACGAAGCAGCCAAGTA CGTATCAGAAGGCCACCGGCCATCGTTCCGGTCTAAAGGATTCATCCCCGAACTCCGAGATTTAACAGACAGCTGCTGGGCAGCTGACATGAACAGAAGA CCTTCGTTCTTGGAAATCCTCAAGAGGCTCGAGAAGATCAAAGAACTCCTACCGTCAGATCACCACTGGTCAATTTTCAACTCTTGA
AA sequence Show only first row Show all	>Lus10030435 pacid=23140641 polypeptide=Lus10030435 locus=Lus10030435.g ID=Lus10030435.BGIv1.0 annot-version=v1.0 MSSGSSSAGGGAWPAEDKQKEKARVSRTSMILWHAHQNDVAAVRKLLEEDPSLVMARDYDNRTPLHVASLHGWIDVATCLIEFGADVNAQDRWKNTPLAD AEGAKKSNMIELLKSYGGLSFGQNGSHFEPKPVPPPLPNKCDWEIDPSELDFSNSSMIGKGSFGEILKACWRGTPVAVKRILPSLSDDRLVIQDFRHEVN LLVKLRHPNIVQFLGAVTEKKPLMLITEYLRGGDLHQHLKEKGALSPATAINFAMDIARGMAYMHNEPNVIIHRDLKPRNVLLVNSSADHLKVGDFGLSK LIRVQNSHDVYKMTGETGSYRYMAPEVFKHRKYDKKVDVFSFAMILYEMMEGEPPLANYEPYEAAKYVSEGHRPSFRSKGFIPELRDLTDSCWAADMNRR PSFLEILKRLEKIKELLPSDHHWSIFNS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14000		VIK	VH1-interacting kinase (.1)		Lus10030435 [exp]	0	1
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10025635 [exp]	1.0	0.8964
AT3G02740			Eukaryotic aspartyl protease f...		Lus10036430 [exp]	2.8	0.8550
AT1G73660			protein tyrosine kinase family...		Lus10031341 [exp]	5.2	0.8428
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10031289 [exp]	8.8	0.8096
AT3G12685			Acid phosphatase/vanadium-depe...		Lus10001841 [exp]	14.7	0.7620
AT3G53570		AME2, AFC1	FUS3-complementing gene 1 (.1....		Lus10024431 [exp]	14.8	0.8246
AT2G30990			Protein of unknown function (D...		Lus10033602 [exp]	15.9	0.8028
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10009055 [exp]	16.5	0.7130
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10006581 [exp]	17.5	0.7657
AT4G30360		ATCNGC17	cyclic nucleotide-gated channe...		Lus10015510 [exp]	17.7	0.7926

Compare expression of checked genes

Lus10030435 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.