Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26690 263 / 2e-89 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G69460 245 / 2e-82 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G14010 237 / 4e-79 emp24/gp25L/p24 family/GOLD family protein (.1) AT2G03290 225 / 2e-74 emp24/gp25L/p24 family/GOLD family protein (.1) AT3G29070 220 / 3e-72 emp24/gp25L/p24 family/GOLD family protein (.1) AT2G03040 169 / 7e-53 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G09580 169 / 2e-52 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G21900 142 / 1e-41 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G57620 139 / 9e-41 emp24/gp25L/p24 family/GOLD family protein (.1) AT3G10780 121 / 1e-33 emp24/gp25L/p24 family/GOLD family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036786 [exp] 320 / 2e-111 AT1G26690 275 / 3e-94 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10037143 [exp] 288 / 9e-100 AT1G26690 249 / 2e-85 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10026625 [exp] 280 / 8e-96 AT1G26690 197 / 9e-64 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10005227 [exp] 202 / 4e-65 AT1G26690 231 / 4e-77 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10030693 [exp] 196 / 2e-63 AT1G26690 218 / 2e-72 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10041939 [exp] 150 / 1e-44 AT1G21900 286 / 1e-98 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10022972 [exp] 145 / 6e-43 AT1G09580 297 / 3e-103 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10001615 [exp] 140 / 3e-41 AT1G09580 294 / 4e-102 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10041182 [exp] 40 / 0.001 AT3G22845 350 / 2e-124 emp24/gp25L/p24 family/GOLD family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G164600 [exp] 280 / 6e-96 AT1G69460 272 / 3e-93 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.008G090700 [exp] 278 / 3e-95 AT1G26690 308 / 1e-107 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.017G086900 [exp] 244 / 7e-82 AT1G26690 282 / 2e-97 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.004G127200 [exp] 242 / 3e-81 AT1G26690 253 / 5e-86 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.018G145544 [exp] 192 / 1e-62 AT1G26690 194 / 8e-64 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.002G085300 [exp] 176 / 7e-55 AT1G09580 280 / 2e-96 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.001G210900 [exp] 156 / 2e-47 AT1G09580 268 / 7e-92 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.003G019300 [exp] 148 / 4e-44 AT1G09580 275 / 1e-94 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.010G081700 [exp] 42 / 0.0001 AT3G22845 366 / 1e-130 emp24/gp25L/p24 family/GOLD family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0521 [flax] [poplar] GOLD-like PF01105 [flax] [poplar] EMP24_GP25L emp24/gp25L/p24 family/GOLD
Representative CDS sequence Show only first row Show all	>Lus10030436 pacid=23140590 polypeptide=Lus10030436 locus=Lus10030436.g ID=Lus10030436.BGIv1.0 annot-version=v1.0 ATGGCTAGTGTTCATAGATGCTTCCTCCTGATCTTCACAGTTACAGCGATCATGCTCCCCGAATCGGAATCCCTCCGATTCGACATCCAATCGTCTCGCA CAAAGTGCATATCCGAGGACATCAAGGCCAATTCCATGACAGTCGGGAAGTACACCGTCATCAACCCCAACGACGGCCACTCTTTACCCGATCACCTCAA GCTCACCGTCAGGGTGACGTCGAGCTATGGGAATAGTTTTCATACGGCGGACAATGTGGAGTCGGGGCAGTTTGCGTTCACGGCTACCGAGACGGGGGAT TACATGGCGTGCTTTTACGCCGCGGGGCATACTCCGGCGGTCGCTACCACGGTGGAGTTTGAGTGGAGGACTGGTGTGGCTGCTAAGGACTGGAATAGCA TCGCCAAGAAAGGTTCTATTGAGGCAATGGAACTGGAGGTGAAGAAACTGTACGACACAACTCTTTCCATCCAAGAGGAGATTTTGTGGTTACGTCAGAG GCAAGTAACAGTCTCCTTTAGTTTCGTGCCTGTCCTTAAAACCTTCGTTAATTTTCGAGATAAAAATGGTATTGGTGTGCTGAGTTTGTTGTTGGTGTGC AGGGAAGAACAGATGCAGGAACTGAACAGATCCACCAACTCGACGATGGGGTGGCTTGGTATGTTCTCTCTGTTCATCTCTTTATCGGTGGCCGGATTCC AGTTTTGGCACCTCAAGACATTTTTCGAGAAGAAGAAGATCATTTAA
AA sequence Show only first row Show all	>Lus10030436 pacid=23140590 polypeptide=Lus10030436 locus=Lus10030436.g ID=Lus10030436.BGIv1.0 annot-version=v1.0 MASVHRCFLLIFTVTAIMLPESESLRFDIQSSRTKCISEDIKANSMTVGKYTVINPNDGHSLPDHLKLTVRVTSSYGNSFHTADNVESGQFAFTATETGD YMACFYAAGHTPAVATTVEFEWRTGVAAKDWNSIAKKGSIEAMELEVKKLYDTTLSIQEEILWLRQRQVTVSFSFVPVLKTFVNFRDKNGIGVLSLLLVC REEQMQELNRSTNSTMGWLGMFSLFISLSVAGFQFWHLKTFFEKKKII

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Lus10030436 [exp]	0	1
AT4G10810			unknown protein		Lus10023038 [exp]	1.0	0.9152
AT4G29340		PRF4	profilin 4 (.1)		Lus10034988 [exp]	2.0	0.9042
AT1G11360			Adenine nucleotide alpha hydro...		Lus10038561 [exp]	2.4	0.9009
AT1G12310			Calcium-binding EF-hand family...		Lus10028915 [exp]	4.7	0.8810
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10015944 [exp]	6.0	0.8941
AT5G08060			unknown protein		Lus10040513 [exp]	9.5	0.8859
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10025470 [exp]	9.8	0.8995
AT5G08060			unknown protein		Lus10021149 [exp]	11.4	0.8965
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Lus10027290 [exp]	12.3	0.8914
AT1G02816			Protein of unknown function, D...		Lus10009854 [exp]	14.3	0.8808

Compare expression of checked genes

Lus10030436 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.