Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14020 760 / 0 O-fucosyltransferase family protein (.1) AT2G03280 702 / 0 O-fucosyltransferase family protein (.1.2) AT5G15740 603 / 0 RRT1 O-fucosyltransferase family protein (.1) AT3G02250 597 / 0 O-fucosyltransferase family protein (.1) AT2G37980 397 / 5e-132 O-fucosyltransferase family protein (.1) AT3G54100 396 / 1e-131 O-fucosyltransferase family protein (.1) AT5G35570 393 / 2e-130 O-fucosyltransferase family protein (.1) AT1G22460 383 / 2e-127 O-fucosyltransferase family protein (.1) AT5G01100 382 / 4e-126 O-fucosyltransferase family protein (.1) AT5G64600 375 / 8e-125 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026624 [exp] 964 / 0 AT1G14020 767 / 0.0 O-fucosyltransferase family protein (.1) Lus10037144 [exp] 889 / 0 AT1G14020 779 / 0.0 O-fucosyltransferase family protein (.1) Lus10036785 [exp] 879 / 0 AT1G14020 772 / 0.0 O-fucosyltransferase family protein (.1) Lus10021717 [exp] 622 / 0 AT5G15740 752 / 0.0 O-fucosyltransferase family protein (.1) Lus10013503 [exp] 621 / 0 AT5G15740 765 / 0.0 O-fucosyltransferase family protein (.1) Lus10007975 [exp] 620 / 0 AT5G15740 772 / 0.0 O-fucosyltransferase family protein (.1) Lus10034651 [exp] 614 / 0 AT5G15740 754 / 0.0 O-fucosyltransferase family protein (.1) Lus10036832 [exp] 533 / 0 AT5G15740 591 / 0.0 O-fucosyltransferase family protein (.1) Lus10019195 [exp] 526 / 0 AT5G15740 587 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G164700 [exp] 795 / 0 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 788 / 0 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 623 / 0 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G113500 [exp] 614 / 0 AT5G15740 801 / 0.0 O-fucosyltransferase family protein (.1) Potri.015G048100 [exp] 603 / 0 AT5G15740 716 / 0.0 O-fucosyltransferase family protein (.1) Potri.012G064200 [exp] 599 / 0 AT5G15740 733 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 409 / 6e-138 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.016G109700 [exp] 410 / 3e-136 AT2G37980 741 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G095300 [exp] 392 / 3e-130 AT2G37980 722 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 387 / 2e-129 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10030437 pacid=23140664 polypeptide=Lus10030437 locus=Lus10030437.g ID=Lus10030437.BGIv1.0 annot-version=v1.0 ATGGAGATTAGATCCGAGAGCGTCGGGCTGAGGTCGGAGAAGCTTGCTGGTGGTGTTGGTGGTGGTGGGTCGGGTCCGGGTAATCCGAGGACCCGGTTAC AGGTCTGGTTCATAAGGGTTTGCTCCAGCATTCTAGTATGGACTTGCTTGGTCCAGCTGGTGGCGGTTGGGGAGCTTTGGCGCCCGCGTTTCGTCACTAA TTTGACTAGTAGGTTCACTCAGATCGCCACCGGTGACCCTCTTCACTTCCAGCAGCCGTCGCCTCCTCCTCCGCCGCCTCTTCCTCCGGCAAGAAATTAC ACGACTAATGGCTTTCTTAGGGTATCATGCAACGGTGGCTTGAATCAAATGCGTTCAGAGATTTGTGATATGGTGGCTGTTGCCCGGCTTTTGAATCTTA CTTTGCTTGTTCCAGAGCTTGATAAAACATCCTTTTGGGCTGACCCCAGCAATTTTGAAGACATCTTTGATGTGAGACATTTTATCGACTCTCTCAGAGA TGAAGTTCGAATAGTCAGAAGACTGCCAAAGAAGATTAGTAAGAAATACAGATATAAAGTACTCGAGATGCCTCCGATTAGCTGGTCAAACGAAAAGTAC TATCTACAGCAGATTCTGCCGCTGTTCAACAAGTCGAAAGTGTTGCACTTCAACAGGACCGACGCACGCTTGGCCAACAATATGATCCCCCTCGAACTCC AGAAGCTGAGGTGTCGTGTCAATTTCCAGGCTCTAAGATTCACTCCGCAAATCGAGAGCTTGGGGTGCAAATTGGTACGAATCCTCCAGGAAAGGGGACC GTTTGTGGCTTTGCATCTGAGATATGAGATGGACATGTTGGCTTTCTCCGGTTGTACTCATGGCTGTACACAGCAAGAAGCTGAAGAGCTTAAACGGCTA AGGTATGCATATCCTTGGTGGAGAGAAAAAGAGATAAACTCAGAGGAGAGAAGATCTCAAGGTTTGTGCCCGTTGACTCCAGAAGAAGCAGCTTTAGTTT TACAAGCGTTAGGGATTGACAATGAAACCCAGATATACATAGCAGCTGGCGAAATCTATGGCAGCGAACGCAGACTCGCCTCGTTACGAGCTGCATTCCC TCGCATTATGAGAAAGGAAACACTTCTGGATCCAATGGAGCTACAGCAGTTCCAGAACCATTCATCTCAAATGGCTGCCTTGGACTTCATGGTTTCAGTA GCCAGCAACACTTTCATCCCTACCTACGACGGGAACATGGCCAAAGTGGTTGAAGGTCACCGTAGGTATCTAGGGTTCAAGAAGACGATCCTCCTCGATC GAAGAAAGCTCGTCGAGCTCCTGAACTTGCACCAGAACGGTACGCTACCGTGGAACAAGTTTGCATCCGGCGTTAGGGAGACACACCGGAAGAGGATGGG GCAGCCTGTTCGTCGGAGGGTGGTTCCCGACAAACCCAAAGAGGAGGATTACTTCTACTCGAACCCTCAAGAGTGTCTCTGCGAGGGGACGGCGAGCTGT GATGTTCTGCTCGGAGCCGGTAACTCGAGCTCCGTTGGATGA
AA sequence Show only first row Show all	>Lus10030437 pacid=23140664 polypeptide=Lus10030437 locus=Lus10030437.g ID=Lus10030437.BGIv1.0 annot-version=v1.0 MEIRSESVGLRSEKLAGGVGGGGSGPGNPRTRLQVWFIRVCSSILVWTCLVQLVAVGELWRPRFVTNLTSRFTQIATGDPLHFQQPSPPPPPPLPPARNY TTNGFLRVSCNGGLNQMRSEICDMVAVARLLNLTLLVPELDKTSFWADPSNFEDIFDVRHFIDSLRDEVRIVRRLPKKISKKYRYKVLEMPPISWSNEKY YLQQILPLFNKSKVLHFNRTDARLANNMIPLELQKLRCRVNFQALRFTPQIESLGCKLVRILQERGPFVALHLRYEMDMLAFSGCTHGCTQQEAEELKRL RYAYPWWREKEINSEERRSQGLCPLTPEEAALVLQALGIDNETQIYIAAGEIYGSERRLASLRAAFPRIMRKETLLDPMELQQFQNHSSQMAALDFMVSV ASNTFIPTYDGNMAKVVEGHRRYLGFKKTILLDRRKLVELLNLHQNGTLPWNKFASGVRETHRKRMGQPVRRRVVPDKPKEEDYFYSNPQECLCEGTASC DVLLGAGNSSSVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14020			O-fucosyltransferase family pr...		Lus10030437 [exp]	0	1
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10043168 [exp]	2.4	0.8975
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10004702 [exp]	4.5	0.8971
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Lus10029353 [exp]	4.5	0.8770
AT1G23190		PGM3	phosphoglucomutase 3, Phosphog...		Lus10003712 [exp]	7.3	0.8899
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Lus10023103 [exp]	8.9	0.8774
AT5G54830			DOMON domain-containing protei...		Lus10041448 [exp]	11.0	0.8554
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10012830 [exp]	12.0	0.8505
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10030479 [exp]	12.6	0.8618
AT3G19870			unknown protein		Lus10012903 [exp]	13.2	0.8658
AT3G46520		ACT12	actin-12 (.1)		Lus10016259 [exp]	13.9	0.8587

Compare expression of checked genes

Lus10030437 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.