Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14040 897 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03240 872 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03260 802 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G26730 759 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G35350 743 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03250 741 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT4G25350 672 / 0 SHB1 SHORT HYPOCOTYL UNDER BLUE1, EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G29060 667 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G69480 561 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G68740 363 / 5e-114 PHO1;H1 EXS (ERD1/XPR1/SYG1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030439 [exp] 1148 / 0 AT1G14040 1127 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10026623 [exp] 1137 / 0 AT1G14040 1058 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030440 [exp] 1021 / 0 AT1G14040 1048 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10037147 [exp] 922 / 0 AT1G14040 1071 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10036779 [exp] 917 / 0 AT1G14040 1080 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10000203 [exp] 515 / 4e-177 AT1G14040 610 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10036781 [exp] 458 / 8e-156 AT1G14040 561 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10019230 [exp] 451 / 8e-150 AT1G69480 676 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10021164 [exp] 391 / 2e-124 AT3G23430 1066 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G090400 [exp] 943 / 0 AT1G14040 1037 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165800 [exp] 929 / 0 AT1G14040 1032 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165300 [exp] 912 / 0 AT1G14040 1022 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G164900 [exp] 910 / 0 AT1G14040 992 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.016G032900 [exp] 748 / 0 AT1G14040 865 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.017G086800 [exp] 745 / 0 AT3G29060 853 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G090300 [exp] 562 / 0 AT1G69480 831 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G169400 [exp] 383 / 1e-121 AT3G23430 1019 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.010G069000 [exp] 380 / 3e-120 AT3G23430 1069 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.008G110800 [exp] 373 / 2e-117 AT1G68740 1096 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03105 [flax] [poplar] SPX SPX domain CL0182 [flax] [poplar] IT PF03124 [flax] [poplar] EXS EXS family
Representative CDS sequence Show only first row Show all	>Lus10030438 pacid=23140616 polypeptide=Lus10030438 locus=Lus10030438.g ID=Lus10030438.BGIv1.0 annot-version=v1.0 ATGGTGCCAGAATGGCAAAAGGCATACATGAACTACAACTTGCTCAAAACCCTCTTGAAAGAAATCCCAAAGTTCATGCAAAAAACCAAACCACCATCAG GCCAAACCGATGTTCGAGGTGCCTTGAGCAGGAAGTTAACCCTCTACAGGACCTTCAGTGGCTTGACAAAGAGCCAAACTAGCTACAACCCTATAAGCCC TTCAGGTCCTGACATCGAGAGCCAGAAGGCGATCCTGGTGAACCCCGTGAGCCACCACGATCACGAACGGTCCGAGAGCTACAAGACGACGTTCCTGTTG GCCTCGGACTCGGGCGGGGAGTACGAGCTGGTGTACTTCAGGAGGCTGGATGATGAGTTCAACAAGGTGAACGAGTTCTATAAGGGGAAAGTGGAGGAAG TTCTGAATGAAGCTGAGACCTTGAACAAGCAAATGGATGCCTTGATCGCATTTCGGATTAAGGTCGAGAACCCGACCGGTTGGTCTCATGAAGACCGAAG TGGGGAGATGACTAGCCTTGCTTCTGATGTTGCTGCCTCTGCTGCTGCCTTGCACGCCACCACTCCTTCTGGAGCCAGAGGCAACAGGATATCTCCGAGT ATGGATGTGATCAATGAAGGATCGCTCGGCCACGAACATTCATCGGATGGCTTGAACCACGCCGACAAAGAAGAAGAAGAAGAACAACAACAACAGCAAC AACATCAACAGGAGATGAAGAAGAACATGATTAATAGAGTGAGGAGACCAGCTCCATTACAGGTCCTACACAAAGTACAGATGAACAATGCCAAAGAAAC ACCAAGATCCACCATCAAAGGGTTCCTCCAAATTCCGGACCACACCGAGCTGAAGTTCACCAGGGAGAATCTGAGGCGAGTCGAGGAGCAGCTGAAGCGC GTCTTCGTCGAGTTCTACCAAAAGCTCAGACTCCTCAAGAGCTACAGCTTCTTGAATGTCCTGGCATTTTCCAAGATCATGAAGAAGTATGATAAGATTA CTTCAAGGGGTGCATCAAAGACTTACATGAAAATGGTGGATAACTCTTACATGGGAAGTTCGAATGAGGTTACGATGCTGATGGAGAGGGTAGAATCGAC ATTCATCAAGCATTTCTCGAACGCGAATCGGAGGGAAGGGATGAACATCTTGAGGCCAAAAGCTAAAAGAGAGAGGCATAGAGCAACATTTACCACGGGT TTCCTCTCTGGCTGCACAGCATCACTTCTGATAGCACTAGTGCTAATCATCCGGGCTCGGAAAATAATGGACGAGCCCGGGAGAGATCAATACATGCATA CCATGTTCCCACTCTACAGCTTGTTCGGATTCATCGTTCTGCACATTGTCATGTACGCTGCGAACATCTTCTTCTGGAGGCAATACGGGGTGAACTACTC CTTCATATTCGGGTTCAACCACGACAGTGAGCTAGGATACCGTCAAGTGTTCCTCGTGGCATTCGGTGTAGCGGTCCTGGCACTTCTTGGTGTACTCTCA AATCTCGATATGGAAATGGACCCGTCACGAAGGATTACAAGGCCTTTACAGAGCTCATCCCTCTCTTCCTTATCACTGCTTATGGTCTTGCTGTTCTTTC CATTGAACATAATGTATCGCCCCGCTCGATTCTTCTTTCTCACTTGTATCCTCCACTCCATACTTGCCCCCCTCTACAAGGTCACGTTACCAGATTTCTT CTTGGCAGATCAACTGACTAGCCAGGTGCAAGCAATAAGGAGCTTAGAGTTCTACATCTGCTACTACGGGTGGGGAGGCTTCAAGCACAGGAAGAACACA TGCCCGGACAGCGGAGTCTACAACACATTCTACTTCATCGTGGCCGTGATCCCTTACATGGCGCGCCTTCTCCAGTGCCTTCGGAGGATGTTTGAGGAGA AAGACGCGATGCAATGGGGCGCTGGGTGGAGGGTGATCGCTTGGGTATTCTCCGCCATTGCAGCCATCGGTGGCACTTACTGGGACCTTGTCTACGACTG GGGACTCCTTCAGCGCGGTTCGAAAAACCGGTGGCTCCGGGACAAGCTCCTTGTTCCACACAAGAGTGTTTATTATATAGCCATGGTGTCAAATGTGGTT CTGAGATGTGCGTGGGCGCAGACGGTGCTCAACATTAACATCCCATCCATGCACGTGCAGACTTCGATCGCCATTGTTGCGAGCTTGGAGATCATTCGTC GTGGCATCTGGAACTTCTTTAGGTTGGAGAATGAGCATCTGAACAATGTAGGGGAATACAGAGCATTCAAATCAGTGCCATTGCCTTTCAATTACAATGA AGATGATGACAAAGATGACTAG
AA sequence Show only first row Show all	>Lus10030438 pacid=23140616 polypeptide=Lus10030438 locus=Lus10030438.g ID=Lus10030438.BGIv1.0 annot-version=v1.0 MVPEWQKAYMNYNLLKTLLKEIPKFMQKTKPPSGQTDVRGALSRKLTLYRTFSGLTKSQTSYNPISPSGPDIESQKAILVNPVSHHDHERSESYKTTFLL ASDSGGEYELVYFRRLDDEFNKVNEFYKGKVEEVLNEAETLNKQMDALIAFRIKVENPTGWSHEDRSGEMTSLASDVAASAAALHATTPSGARGNRISPS MDVINEGSLGHEHSSDGLNHADKEEEEEQQQQQQHQQEMKKNMINRVRRPAPLQVLHKVQMNNAKETPRSTIKGFLQIPDHTELKFTRENLRRVEEQLKR VFVEFYQKLRLLKSYSFLNVLAFSKIMKKYDKITSRGASKTYMKMVDNSYMGSSNEVTMLMERVESTFIKHFSNANRREGMNILRPKAKRERHRATFTTG FLSGCTASLLIALVLIIRARKIMDEPGRDQYMHTMFPLYSLFGFIVLHIVMYAANIFFWRQYGVNYSFIFGFNHDSELGYRQVFLVAFGVAVLALLGVLS NLDMEMDPSRRITRPLQSSSLSSLSLLMVLLFFPLNIMYRPARFFFLTCILHSILAPLYKVTLPDFFLADQLTSQVQAIRSLEFYICYYGWGGFKHRKNT CPDSGVYNTFYFIVAVIPYMARLLQCLRRMFEEKDAMQWGAGWRVIAWVFSAIAAIGGTYWDLVYDWGLLQRGSKNRWLRDKLLVPHKSVYYIAMVSNVV LRCAWAQTVLNINIPSMHVQTSIAIVASLEIIRRGIWNFFRLENEHLNNVGEYRAFKSVPLPFNYNEDDDKDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10030438 [exp]	0	1
AT1G69550			disease resistance protein (TI...		Lus10001788 [exp]	1.7	0.9191
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10015906 [exp]	5.5	0.8818
					Lus10041636 [exp]	7.2	0.9177
AT1G72610		ATGER1, GLP1	A. THALIANA GERMIN-LIKE PROTEI...		Lus10002795 [exp]	12.0	0.9078
AT1G13570			F-box/RNI-like superfamily pro...		Lus10011048 [exp]	12.8	0.8978
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10040252 [exp]	16.3	0.8840
AT5G41050			Pollen Ole e 1 allergen and ex...		Lus10032018 [exp]	17.7	0.8731
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10030480 [exp]	18.8	0.8903
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10026461 [exp]	18.8	0.8808
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10039891 [exp]	20.7	0.8898

Compare expression of checked genes

Lus10030438 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.