Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14040 1088 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03240 1034 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03260 959 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G26730 910 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G35350 901 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03250 893 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT4G25350 839 / 0 SHB1 SHORT HYPOCOTYL UNDER BLUE1, EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G29060 792 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G69480 768 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G68740 430 / 4e-139 PHO1;H1 EXS (ERD1/XPR1/SYG1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026623 [exp] 1467 / 0 AT1G14040 1058 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030440 [exp] 1263 / 0 AT1G14040 1048 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030438 [exp] 1211 / 0 AT1G14040 976 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10036779 [exp] 1141 / 0 AT1G14040 1080 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10037147 [exp] 1138 / 0 AT1G14040 1071 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10000203 [exp] 660 / 0 AT1G14040 610 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10036781 [exp] 602 / 0 AT1G14040 561 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10019230 [exp] 540 / 0 AT1G69480 676 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10021164 [exp] 456 / 9e-149 AT3G23430 1066 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G090400 [exp] 1164 / 0 AT1G14040 1037 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165800 [exp] 1137 / 0 AT1G14040 1032 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165300 [exp] 1127 / 0 AT1G14040 1022 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G164900 [exp] 1117 / 0 AT1G14040 992 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.017G086800 [exp] 914 / 0 AT3G29060 853 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.016G032900 [exp] 899 / 0 AT1G14040 865 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G090300 [exp] 700 / 0 AT1G69480 831 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G069000 [exp] 445 / 6e-145 AT3G23430 1069 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.008G110800 [exp] 444 / 2e-144 AT1G68740 1096 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G169400 [exp] 439 / 2e-142 AT3G23430 1019 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03105 [flax] [poplar] SPX SPX domain CL0182 [flax] [poplar] IT PF03124 [flax] [poplar] EXS EXS family
Representative CDS sequence Show only first row Show all	>Lus10030439 pacid=23140713 polypeptide=Lus10030439 locus=Lus10030439.g ID=Lus10030439.BGIv1.0 annot-version=v1.0 ATGAAGTTCGGGAAGGAATTCACGGCACAAATGGTGCCGGAATGGCAACAGGCATACATGGACTACAACTTCCTCAAAACCCTCTTGAAAGAAATCCAAA AGTTCAGACAAAGAACCAAGCCAACATCAACCCAAACCGGTGGTGTTGGAGGTGCCTTGAGCCGGAAGTTAACCCTCTACAGGGCCTTCAGTGGGTTGAC ACAGAGCCACACAAGCTACAACCCGATAAGCCCTTCCGATGCTGACATCGAGAGCCAGGTGATTCTCGTGAACCCCGTTCGCCACGAAGAAGGCGATCAT CAGAACTACCAGACGACGTTCCTGATGGCATCAGACTCGGGCGGGGAGTACGAGATGGTGTACTTCAGGAGGCTGGATGATGAGTTCAACAAGGTGAACA AGTTCTACAAGGCCAAAGTGGAGGAAGTTATGAAAGAGGCTGATAACTTGAACAAGCAAATGGATGCCTTGATTGCATTTCGGATTAAGGTCGAGAACCC GACCGGTTGGTCTCATGAAGACAGAACAGGGGAGATGACTAGGCTTGCTTCTGATGTTGCTGCCTCTGCTGCTGCCTTGCACTCCACCACTCCTTCTGGA GCCAGAGCCAGCAGTAAATCTCCGAGTCTGGATGCGATCGATGAAGGATCGTTCGGCAACGAACAATCCTCAGATGGCTCGAGCCACGACAAAGAAGAAG AACAACAGATGAAGAAGAACAAGGTTAAATTTCCACCAACAAGGAAGCCACACAACATGAATGTTGTGAGAAGGCCAGCTCCATTACAGGTCCTACAGAA CGTCCAGATAAACAATGCCAAGGAAACACCAAGATCCACCATTAAAGGGTTCCTCAATGTTCCGAGCCATACCGAGCTGAAGTTCACCCGGGAGAATCTG AGGAGGGTCGAAGAGCAGCTCAAGCGTGCCTTCGTCGAGTTCTACCAGAAGCTCAGGCTCCTCAAGAGCTACAGCTTCTTGAATGTTCTGGCATTTTCCA AGATCATGAAGAAATATGATAAGATTACTTCGAGGGGTGCATCAAAGGCTTACATGAAAATGGTGGATAACTCTTATTTGGGAAGTTCGGATGAGGTTAC GAAGCTGATGGAGAGGGTAGAAGCGACATTCATCAAGCATTTCTCGAACGCGAATCGGAGCAAAGGGATGAACATCTTGAGGCCGAAAGCTAAAAGAGAA AGGCATAGGACAACATTTACTATGGGGTTCCTCTCTGGCTGCACTGCAGCACTTCTGATAGCACTAGTACTAATCTTCCGGGCTCACAAAATCATGGAGG AGCCCGGGAGAGAACAGTACATGCAGACCATGTTCCCACTCTACAGCTTGTTCGGATTCATAGTTCTGCACATTGTCATGTACGCTGCGAACATCTTCTT CTGGAGGCGATACCGGGTGAACTACTCCTTCATATTCGGGTTCAAACAGGGCTCTGAGTTGGGATACCGCCAAGTGTTCCTTGTGGCATTCGGTATAGCA GTCCTGGCACTTCTTAGTATACTATCGAATCTCGACATGGAAATGGACCCCGTCACGAAGGATTACCAGGCCTTTACCGAGCTCGTCCCTCTCCTCCTGA TCAGTCTGCTCATGGTCTTGCTGTTCTTGCCATTGAACATATTGTATCGCTCCGCTCGATTCTTCCTGCTCACTTGTATCCTTCACTGCATAGCTGCCCC CCTCTACAAGGTCACGCTACCGGATTTCTTCCTGGCAGATCAGCTGACTAGCCAGGTGCAAGCAATAAGGAGCTTAGAGTTCTACATCTGCTACTACGGG TGGGGAGACTTCAAGCACAGGAAGAACACATGCCCGGACAGCGGAGTCTACAACACATTCTACTTCATCGTGGCCGTGATCCCTTACATGGCGCGCCTTC TCCAGTGCCTTCGGAGGATGTTCGAGGAGAAAGACACGATGCAAGGGGTCAACGGGTTGAAGTACCTTGTCACAATTGTAGCGGTCACATTAAGAACCGC CTACAGCTTGAACAAGGGCGTCGGGTGGAGGGTGATCGCTTGGGTATTCTCCGCCATTGCAGCCATCGGTGGCACTTACTGGGACCTTGTCTACGACTGG GGACTCCTTCAGCGCGGTTCGAGAAACCGGTGGCTCCGGGACAAGCTCCTTGTTCCACACAAGAGTGTTTATTATGCAGCCATGGTGTTGAATGTGTTGC TGAGGTTTGCGTGGCTGCAGACGGTGCTTAACTTTAACTTCACTTTCTTGCATAGGCAGACTCTGATCGCTATCGTTGCGAGCTTGGAGATCATTCGTCG TGGCATCTGGAACTTCTTTAGGTTGGAGAATGAGCATCTGCACAATGTAGGGAAATACAGAGCTTTTAAATCAGTTCCATTGCCTTTCAATTACAATGAA GATGATGACAAAGATGAGTAG
AA sequence Show only first row Show all	>Lus10030439 pacid=23140713 polypeptide=Lus10030439 locus=Lus10030439.g ID=Lus10030439.BGIv1.0 annot-version=v1.0 MKFGKEFTAQMVPEWQQAYMDYNFLKTLLKEIQKFRQRTKPTSTQTGGVGGALSRKLTLYRAFSGLTQSHTSYNPISPSDADIESQVILVNPVRHEEGDH QNYQTTFLMASDSGGEYEMVYFRRLDDEFNKVNKFYKAKVEEVMKEADNLNKQMDALIAFRIKVENPTGWSHEDRTGEMTRLASDVAASAAALHSTTPSG ARASSKSPSLDAIDEGSFGNEQSSDGSSHDKEEEQQMKKNKVKFPPTRKPHNMNVVRRPAPLQVLQNVQINNAKETPRSTIKGFLNVPSHTELKFTRENL RRVEEQLKRAFVEFYQKLRLLKSYSFLNVLAFSKIMKKYDKITSRGASKAYMKMVDNSYLGSSDEVTKLMERVEATFIKHFSNANRSKGMNILRPKAKRE RHRTTFTMGFLSGCTAALLIALVLIFRAHKIMEEPGREQYMQTMFPLYSLFGFIVLHIVMYAANIFFWRRYRVNYSFIFGFKQGSELGYRQVFLVAFGIA VLALLSILSNLDMEMDPVTKDYQAFTELVPLLLISLLMVLLFLPLNILYRSARFFLLTCILHCIAAPLYKVTLPDFFLADQLTSQVQAIRSLEFYICYYG WGDFKHRKNTCPDSGVYNTFYFIVAVIPYMARLLQCLRRMFEEKDTMQGVNGLKYLVTIVAVTLRTAYSLNKGVGWRVIAWVFSAIAAIGGTYWDLVYDW GLLQRGSRNRWLRDKLLVPHKSVYYAAMVLNVLLRFAWLQTVLNFNFTFLHRQTLIAIVASLEIIRRGIWNFFRLENEHLHNVGKYRAFKSVPLPFNYNE DDDKDE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10030439 [exp]	0	1
AT1G02030	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10027220 [exp]	1.4	0.9794
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10041511 [exp]	2.0	0.9842
AT5G56110	MYB	MS188, ATMYB80,...	MALE STERILE 188, ARABIDOPSIS ...		Lus10027110 [exp]	5.3	0.9663
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10022303 [exp]	8.2	0.9728
AT1G71520	AP2_ERF		Integrase-type DNA-binding sup...		Lus10041044 [exp]	8.4	0.9709
AT5G51890			Peroxidase superfamily protein...		Lus10038054 [exp]	9.7	0.9538
					Lus10011681 [exp]	10.6	0.9585
AT5G39650		DAU2	DUO1-activated unknown 2, Prot...		Lus10012821 [exp]	14.1	0.9623
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10021313 [exp]	15.6	0.9740
AT1G67070		PMI2, DIN9	PHOSPHOMANNOSE ISOMERASE 2, DA...		Lus10015062 [exp]	16.2	0.9695

Compare expression of checked genes

Lus10030439 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.