Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14040 978 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03240 959 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03260 871 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G26730 828 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G35350 818 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03250 797 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT4G25350 769 / 0 SHB1 SHORT HYPOCOTYL UNDER BLUE1, EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G29060 723 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G69480 696 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G23430 395 / 1e-125 PHO1, ATPHO1 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030439 [exp] 1253 / 0 AT1G14040 1127 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10026623 [exp] 1185 / 0 AT1G14040 1058 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030438 [exp] 1082 / 0 AT1G14040 976 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10036779 [exp] 1030 / 0 AT1G14040 1080 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10037147 [exp] 1019 / 0 AT1G14040 1071 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10000203 [exp] 810 / 0 AT1G14040 610 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10036781 [exp] 525 / 0 AT1G14040 561 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10019230 [exp] 500 / 2e-168 AT1G69480 676 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10021164 [exp] 433 / 4e-140 AT3G23430 1066 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G090400 [exp] 1037 / 0 AT1G14040 1037 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165800 [exp] 1023 / 0 AT1G14040 1032 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165300 [exp] 1008 / 0 AT1G14040 1022 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G164900 [exp] 1003 / 0 AT1G14040 992 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.017G086800 [exp] 848 / 0 AT3G29060 853 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.016G032900 [exp] 814 / 0 AT1G14040 865 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G090300 [exp] 634 / 0 AT1G69480 831 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G069000 [exp] 411 / 6e-132 AT3G23430 1069 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.008G110800 [exp] 397 / 4e-126 AT1G68740 1096 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G132300 [exp] 388 / 1e-122 AT1G68740 1139 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03105 [flax] [poplar] SPX SPX domain CL0182 [flax] [poplar] IT PF03124 [flax] [poplar] EXS EXS family
Representative CDS sequence Show only first row Show all	>Lus10030440 pacid=23140579 polypeptide=Lus10030440 locus=Lus10030440.g ID=Lus10030440.BGIv1.0 annot-version=v1.0 ATGAAGTTCGGGAAGGAATTCGTAGCGCAGATGGTGCCGGAGTGGCAAGTAGCATACATGGATTACAACTTCCTCAAAACCCTCTTGAAAGAAGTTCAAA AATTCCGGCAAAGAACCAAGCCAACAACATCTAACCAAAGTGGTGGTGGTGGCGGTGGAGGTCCCTTGAGCAGGAAGTTAACTCTCTACAGAGCCTTCAG TGGCTTGACCAACCCTATAAGCCCTTCTGATCCTGACATCGAGAGCCAGGCGATTCTCGTTAACCCCGTGAGCCACGAAGGAGGCGACCATCAGAGCTAC CAGACGACGTTCCTGATGGCTTCAGACGAAGGCGGAGAGTACGAGCTTGTGTACTTCAGGAGGCTAGATGATGAGTTCAACAAGGTGAACAAGTTCTACA AGGCCAAAGTGGAGGAAGTTCTGAAAGAAGCTGATACCTTGAACAAGCAAATGGATGCCTTGATTGCATTTCGGATTAAGGTCGAGAATCCGACCGGTTG GTCAGTCGAAACTCGGAGCGGGGAGATGACTAGGCTTGCTTCTGATGTTGCTGTCTCTGCTGCTGCTTTGTATGCCACCACTCCTTCTGGAGCCAGAGCT AGCAGAAAATCTCCGAGTTTAGATGTGATAGAGGAAGGATCGATCCGACACGAACAATCCTCAGATGGCTCCAGCAACGATGAAGCAGAAGACCAAGAGA CAGAACAGAAGAACAAGAACAAGAAACCACCAAGGAAGCCGAACAGCATGAACGCCACGAAGAGACCGGCTTCATTGCAAATCCTACACCAGGTGAAGAT GAACAACACCAAAGAGACTCCAAGATCCACCATTAAAGGAATGCTCAAGGATCCAAGCCATACCGAGCTCAAGTTCACGAGGGAGAATCTCAGGAGAGTG GAAGAACAGCTTAAGCGCGCTTTCGTCGAGTTCTATCAGAAGCTCAGACTCCTCAAGAGCTACAGCTTCTTGAACTCCCTGGCATTTTCCAAGATCATGA AGAAGTATGATAAGATTACTTCAAGGGGTGCATCAAAGGCATACATGAGAACGGTGGATAACTCTTACTTGGGAAGTTCGGATGAGGTTACGAAGCTGAT GGAGAGGGTAGAAGCGACATTCATCAAGCATTTCTCGAATGCGAACCGCACCAAAGGGATGAACATCTTGAGGCCAACAGCTAAAAGAGAAAGGCACAGG ACAACATTCACCATGGGTTTCCTCTCTGGATGCACTGCAGCACTACTAATAGCACTAGTACTGATCGCCAGAGCTAGGAAGATAATGCTCGAGCCCGGGC AAGAGCTCTACATGCAAACAATGTTTCCACTTTATAGCTTGTTTGGATTCATTGTTCTGCACATAGTCCTCTATGCTGCAAACATTTACTTCTGGAGGCG ATACCGGGTGAACTATTCCTTCATTTTCGGGTTCAAACCCGATAATGAGTTAGGATACCGACAAGTATTCCTTGTGGCTTCCGGTATTGCAGTCCTGGCA CTTGTCGGTATACTCTCGAATCTCGACATGGAAATGGACAAAGTGACCAAGGATTTCCAAGCCTTGACTGAGCTAATCCCTCTCGGCCTTGTTACTCTAC TTCTGGTGCTGTTGTTCTTGCCTTTGAACATCCTGTATCGGCCAGCTCGATTCTTCTTCCTCACTTGCGTCCTCCACTGCATCGCTGCTCCGCTCTACAA GGTAACTCTACCGGACTTCTTCTTGGCAGATCAACTAACTAGCCAGGTGCAAGCCATTAGGAGTTTGGAGTTCTACGTCTGTTATTACGGCTGGGGAGAC TTTACACGCAGGAAGAACACCTGCACAAAAAACGATGTATACGAAACCTTCAACTTCATTGTCGCGGTGATTCCATACATGGTGCGTCTTCTCCAGTGCC TTCGCAGGATGTTCGAAGAGAAAGATAGGATGCAAGGGGTCAACGGGTTGAAGTACCTCGTGACGATAGTAGCAGTCACGTTGAGAACCGCCAACGACAG GTTCATTTGGGCAGCTAGGCTATTCTCAGCCGCTGCAGCCATTGGCGGAACGTACTGGGACCTTGTTTACGACTGGGGTCTGCTTCAGCGAGGTTCGAAG AACCGGTTGCTTCGGGACAAGCTCCTCGTCCCACATAAGAGTGTCTATTACATTGCAATGGTGAGTCCGGAATTTATTGGTTGTTTGGATGAGGTGCTCA ATGTGTTGCTGAGATTCGCATGGGTGCAGACGGTGGTGAACTTTGACTTGAAGTTCCTACACGAGAAAACTATAGTCGCCATCATTGCGAGCTTGGAGAT CATACGCCGTGGCATCTGGAACTTCTTCCGGCTGGAGAACGAGCATCTTCACAATGTAGGCAAGTACAGAGCGTTCAAATCGGTACCGCTGCCTTTCAAT TACGACGAAGATGATGACAAAGACGATTAG
AA sequence Show only first row Show all	>Lus10030440 pacid=23140579 polypeptide=Lus10030440 locus=Lus10030440.g ID=Lus10030440.BGIv1.0 annot-version=v1.0 MKFGKEFVAQMVPEWQVAYMDYNFLKTLLKEVQKFRQRTKPTTSNQSGGGGGGGPLSRKLTLYRAFSGLTNPISPSDPDIESQAILVNPVSHEGGDHQSY QTTFLMASDEGGEYELVYFRRLDDEFNKVNKFYKAKVEEVLKEADTLNKQMDALIAFRIKVENPTGWSVETRSGEMTRLASDVAVSAAALYATTPSGARA SRKSPSLDVIEEGSIRHEQSSDGSSNDEAEDQETEQKNKNKKPPRKPNSMNATKRPASLQILHQVKMNNTKETPRSTIKGMLKDPSHTELKFTRENLRRV EEQLKRAFVEFYQKLRLLKSYSFLNSLAFSKIMKKYDKITSRGASKAYMRTVDNSYLGSSDEVTKLMERVEATFIKHFSNANRTKGMNILRPTAKRERHR TTFTMGFLSGCTAALLIALVLIARARKIMLEPGQELYMQTMFPLYSLFGFIVLHIVLYAANIYFWRRYRVNYSFIFGFKPDNELGYRQVFLVASGIAVLA LVGILSNLDMEMDKVTKDFQALTELIPLGLVTLLLVLLFLPLNILYRPARFFFLTCVLHCIAAPLYKVTLPDFFLADQLTSQVQAIRSLEFYVCYYGWGD FTRRKNTCTKNDVYETFNFIVAVIPYMVRLLQCLRRMFEEKDRMQGVNGLKYLVTIVAVTLRTANDRFIWAARLFSAAAAIGGTYWDLVYDWGLLQRGSK NRLLRDKLLVPHKSVYYIAMVSPEFIGCLDEVLNVLLRFAWVQTVVNFDLKFLHEKTIVAIIASLEIIRRGIWNFFRLENEHLHNVGKYRAFKSVPLPFN YDEDDDKDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10030440 [exp]	0	1
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10000203 [exp]	1.0	0.9012
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10005650 [exp]	5.9	0.7482
AT5G42250			Zinc-binding alcohol dehydroge...		Lus10005651 [exp]	8.5	0.7200
					Lus10008695 [exp]	13.3	0.7574
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10014041 [exp]	20.0	0.6609
AT3G04020			unknown protein		Lus10005954 [exp]	20.8	0.6302
AT1G52790			2-oxoglutarate (2OG) and Fe(II...		Lus10005773 [exp]	24.1	0.7567
					Lus10008694 [exp]	24.2	0.7555
AT4G35160			O-methyltransferase family pro...		Lus10018628 [exp]	29.7	0.7056
AT5G01740			Nuclear transport factor 2 (NT...		Lus10001261 [exp]	32.9	0.6381

Compare expression of checked genes

Lus10030440 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.