Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14060 87 / 2e-21 GCK domain-containing protein (.1) AT5G02210 65 / 3e-13 GCK domain-containing protein (.1) AT5G57570 63 / 1e-12 GCK domain-containing protein (.1) AT5G57640 62 / 6e-12 GCK domain-containing protein (.1) AT1G14048 48 / 2e-07 GCK domain-containing protein (.1) AT1G23201 47 / 2e-06 unknown protein AT2G03230 39 / 0.0005 GCK domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026621 [exp] 140 / 4e-42 AT1G14060 95 / 1e-24 GCK domain-containing protein (.1) Lus10037148 [exp] 85 / 3e-21 AT1G14060 79 / 4e-19 GCK domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G081400 [exp] 103 / 3e-28 AT1G14060 99 / 8e-27 GCK domain-containing protein (.1) Potri.013G109100 [exp] 102 / 8e-28 AT1G14060 100 / 5e-27 GCK domain-containing protein (.1) Potri.013G099100 [exp] 102 / 2e-27 AT1G14060 92 / 2e-23 GCK domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07802 [flax] [poplar] GCK GCK domain
Representative CDS sequence Show only first row Show all	>Lus10030441 pacid=23140634 polypeptide=Lus10030441 locus=Lus10030441.g ID=Lus10030441.BGIv1.0 annot-version=v1.0 ATGGGAGCTTACTTTTCTTCTTCATCTTCGACCACCGAAGAAGAATCTTCTCCATCAGCACCAAATTCAACTTCGCCGCCGGAGATTCCACCAGCCGATA TGTCGTCGCCTTCTCCCGATCCGAAACGCACGGAGGAGGAGGAGGAGCAAGAGACCACGGCGTCGGAATCGGAGCAATTGAAGTCGGAGGAGCAAGAGAC TACGGCGGCGGGATCGGAGCAATTGAAGAAGGAGGAGGATGGGGAAGAGGGAGAGGAAGGAGAGTGTGGGTTCTGCTTGTTTATGAAAGGAGGAGCTTGC AAGGACTCATTTATAGCTTGGGAGGATTGCGTGAAGGACGCGGAGGATGAGAAGGTTGACCTGGTGACGAAGTGTTCTGAGGCGACTAGGGTTTTGAAAT TGTGCCTCGACGCGAATCCTGATTACTACGAGCCGATCTTGAGGGCGGAGAAGAGTGCGGAGGAGCAGGCGATGAAGGAGATTCGGGAGGAAGAGGCGCA GCGGAAGGCTGCGGCGGAGGAGGGATCATCGGAAGGAGTTGCTATTGTGGCGGTGGAGGAGGAGGCTTCTTCGAAGTAG
AA sequence Show only first row Show all	>Lus10030441 pacid=23140634 polypeptide=Lus10030441 locus=Lus10030441.g ID=Lus10030441.BGIv1.0 annot-version=v1.0 MGAYFSSSSSTTEEESSPSAPNSTSPPEIPPADMSSPSPDPKRTEEEEEQETTASESEQLKSEEQETTAAGSEQLKKEEDGEEGEEGECGFCLFMKGGAC KDSFIAWEDCVKDAEDEKVDLVTKCSEATRVLKLCLDANPDYYEPILRAEKSAEEQAMKEIREEEAQRKAAAEEGSSEGVAIVAVEEEASSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14060			GCK domain-containing protein ...		Lus10030441 [exp]	0	1
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Lus10017890 [exp]	4.8	0.7539
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Lus10035065 [exp]	7.5	0.7270
AT3G22660			rRNA processing protein-relate...		Lus10031698 [exp]	11.5	0.6948
AT3G24080			KRR1 family protein (.1.2)		Lus10028084 [exp]	17.8	0.6774
AT5G40570			Surfeit locus protein 2 (SURF2...		Lus10003658 [exp]	19.8	0.6686
AT1G27435			unknown protein		Lus10041533 [exp]	27.8	0.6621
AT2G33845			Nucleic acid-binding, OB-fold-...		Lus10039889 [exp]	32.2	0.6815
AT2G15220			Plant basic secretory protein ...		Lus10038602 [exp]	35.0	0.6081
AT3G55730	MYB	ATMYB109	myb domain protein 109 (.1)		Lus10028250 [exp]	35.6	0.6583
AT4G17520			Hyaluronan / mRNA binding fami...		Lus10000599 [exp]	38.9	0.6215

Compare expression of checked genes

Lus10030441 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.