Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14140 401 / 1e-141 Mitochondrial substrate carrier family protein (.1) AT3G54110 185 / 6e-57 ATUCP1, UCP1, UCP2, UCP, ATPUMP1 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) AT5G58970 182 / 8e-56 ATUCP2 uncoupling protein 2 (.1.2) AT4G24570 159 / 1e-46 DIC2 dicarboxylate carrier 2 (.1) AT2G22500 150 / 2e-43 UCP5, ATPUMP5, DIC1 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) AT4G03115 144 / 8e-41 Mitochondrial substrate carrier family protein (.1) AT5G09470 139 / 6e-39 DIC3 dicarboxylate carrier 3 (.1) AT5G19760 131 / 4e-36 Mitochondrial substrate carrier family protein (.1) AT5G61810 86 / 4e-19 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2) AT3G51870 86 / 7e-19 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040709 [exp] 184 / 2e-56 AT5G58970 512 / 0.0 uncoupling protein 2 (.1.2) Lus10035538 [exp] 181 / 4e-55 AT3G54110 512 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10027755 [exp] 181 / 4e-55 AT3G54110 515 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10021123 [exp] 177 / 2e-53 AT3G54110 521 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10017187 [exp] 174 / 2e-52 AT3G54110 501 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10016445 [exp] 170 / 1e-50 AT5G58970 493 / 1e-177 uncoupling protein 2 (.1.2) Lus10024769 [exp] 147 / 4e-42 AT4G03115 401 / 3e-141 Mitochondrial substrate carrier family protein (.1) Lus10007883 [exp] 128 / 6e-34 AT5G19760 536 / 0.0 Mitochondrial substrate carrier family protein (.1) Lus10030361 [exp] 123 / 3e-33 AT5G19760 489 / 9e-177 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G165900 [exp] 406 / 2e-143 AT1G14140 447 / 1e-159 Mitochondrial substrate carrier family protein (.1) Potri.001G247800 [exp] 188 / 7e-58 AT5G58970 456 / 3e-163 uncoupling protein 2 (.1.2) Potri.006G095500 [exp] 182 / 8e-56 AT3G54110 513 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Potri.016G110100 [exp] 177 / 1e-53 AT3G54110 483 / 5e-174 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Potri.017G047800 [exp] 160 / 6e-47 AT4G24570 435 / 2e-154 dicarboxylate carrier 2 (.1) Potri.007G113000 [exp] 159 / 1e-46 AT4G24570 404 / 4e-142 dicarboxylate carrier 2 (.1) Potri.017G045150 [exp] 157 / 9e-46 AT2G22500 457 / 3e-163 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G045100 [exp] 157 / 1e-45 AT2G22500 451 / 6e-161 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.002G104400 [exp] 156 / 2e-45 AT2G22500 427 / 1e-151 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.005G157300 [exp] 151 / 2e-43 AT2G22500 412 / 2e-145 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10030443 pacid=23140556 polypeptide=Lus10030443 locus=Lus10030443.g ID=Lus10030443.BGIv1.0 annot-version=v1.0 ATGGAACCCAAATCGAGCTCCAAATCCAGTGCCAAGAAGCGAATCCTGCTCACGTCGTTCTCCGCCATGGCGGCGGAGACGGCCACCTTTCCGATCGACT TGACAAAGACACGGATGCAGCTTCACGGCGAGTCTCTCTCCGCCGCCGCCACCACCAACGCCTTCCGTGTCGCGTCGGAGATCTGCCGGCGGCAAGGGCT TCTCGGTCTATACCAGGGGCTCTACCCTGCCGTCATCAGGCACTTGTTCTACACCCCGATTCGGATCGTTGGTTACGAGAATTTGAGAAATTTCGTTGAC GGCGGCGACGGTTCTGTTTCTCTATTTGGGAAAGCGGTTGTCGGCGGTGCTTCTGGTGCTTTTGCTCAGATTGTGGCGAGCCCTGCAGATCTCGTAAAGG TGAGGATGCAAGCAGACAGCCTAATGACAGCACAAGGCATCAAGCCAAGATACACAAGCTCATTCGACGCATTTGCGAAGATCGTAGCAGCAGAAGGCTA CATGGGGTTGTGGAGAGGTGTTGTCCCAAACATTCAAAGAGCATTCCTAGTGAACATGGGAGAGCTAGCCTGCTACGACCATGCAAAACAGTTTGTGATC CGAAACCGGATTGCAGAGGACAACATCTACTCCCACACATTGGCCTCAACCATGTCTGGACTCTGTGCCACCGCATTGAGCTGTCCAGCTGATGTGGTGA AAACACGAATGATGAATAATGGTTCTACATACAGAAGCTCGTTCGATTGTGTGGTGAAAACGGTTAGGAACGAAGGGTTGGCAGCTCTGTGGAAAGGGTT CTTTCCTACGTGGGCAAGGCTCGGTCCCTGGCAATTTGTGTTCTGGGTTTCATACGAGAAGCTCCGACGAGTCGCTGGGATGTCTTCCTTCTGA
AA sequence Show only first row Show all	>Lus10030443 pacid=23140556 polypeptide=Lus10030443 locus=Lus10030443.g ID=Lus10030443.BGIv1.0 annot-version=v1.0 MEPKSSSKSSAKKRILLTSFSAMAAETATFPIDLTKTRMQLHGESLSAAATTNAFRVASEICRRQGLLGLYQGLYPAVIRHLFYTPIRIVGYENLRNFVD GGDGSVSLFGKAVVGGASGAFAQIVASPADLVKVRMQADSLMTAQGIKPRYTSSFDAFAKIVAAEGYMGLWRGVVPNIQRAFLVNMGELACYDHAKQFVI RNRIAEDNIYSHTLASTMSGLCATALSCPADVVKTRMMNNGSTYRSSFDCVVKTVRNEGLAALWKGFFPTWARLGPWQFVFWVSYEKLRRVAGMSSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14140			Mitochondrial substrate carrie...		Lus10030443 [exp]	0	1
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10039925 [exp]	1.4	0.8998
AT1G76570			Chlorophyll A-B binding family...		Lus10015235 [exp]	1.7	0.8871
AT1G12855			F-box family protein (.1)		Lus10029699 [exp]	2.4	0.8657
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Lus10038537 [exp]	2.4	0.8896
AT1G19600			pfkB-like carbohydrate kinase ...		Lus10007397 [exp]	3.7	0.8608
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10030734 [exp]	5.7	0.8234
AT1G54340		ICDH	isocitrate dehydrogenase (.1)		Lus10010431 [exp]	5.7	0.8468
AT5G07840		PIA1	phytochrome interacting ankyri...		Lus10018958 [exp]	6.9	0.8854
AT1G56423			unknown protein		Lus10029844 [exp]	7.4	0.8795
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Lus10030312 [exp]	10.8	0.8467

Compare expression of checked genes

Lus10030443 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.