Plant FIBer expression Database

Lus10030444 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G04660 969 / 0 APC2 anaphase-promoting complex/cyclosome 2 (.1)
AT4G02570 53 / 8e-07 AXR6, ATCUL1 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
AT1G02980 53 / 9e-07 ATCUL2, CUL2 cullin 2 (.1)
AT1G43140 51 / 3e-06 Cullin family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026619
[exp]
1405 / 0 AT2G04660 1167 / 0.0 anaphase-promoting complex/cyclosome 2 (.1)
Lus10032200
[exp]
55 / 3e-07 AT4G02570 1269 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
Lus10024562
[exp]
55 / 3e-07 AT4G02570 1271 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
Lus10028917
[exp]
54 / 4e-07 AT4G02570 1290 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
Lus10004334
[exp]
54 / 5e-07 AT4G02570 1279 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
Lus10023306
[exp]
47 / 9e-05 AT5G46210 1077 / 0.0 cullin4 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G089600
[exp]
1072 / 0 AT2G04660 1178 / 0.0 anaphase-promoting complex/cyclosome 2 (.1)
Potri.008G217300
[exp]
54 / 3e-07 AT4G02570 1272 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
Potri.010G023800
[exp]
53 / 1e-06 AT4G02570 1265 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
Potri.001G117200
[exp]
48 / 2e-05 AT4G02570 1226 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
Potri.003G115500
[exp]
47 / 4e-05 AT4G02570 1209 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
Potri.004G132900
[exp]
43 / 0.001 AT5G46210 1211 / 0.0 cullin4 (.1)
Potri.008G089100
[exp]
0 / 1 AT2G04660 0 / 1 anaphase-promoting complex/cyclosome 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00888 Cullin Cullin family
CL0123 HTH PF08672 ANAPC2 Anaphase promoting complex (APC) subunit 2
Representative CDS sequence
>Lus10030444 pacid=23140554 polypeptide=Lus10030444 locus=Lus10030444.g ID=Lus10030444.BGIv1.0 annot-version=v1.0
ATGGAAGAATCATCGACGACTCAATCAGTATGCAATTTCTATGTTCTCGACGCATTGAGCAGGGATTCCATTCAGGAAATCCTTGACAGCTACAATGGCT
TCTGCTCAACCTCCGAAACACTTCTCAGCTCTACCTCCAGCGACGTCTCCGTCGGACGGGAGTTCGTTTCTCACGCTCGCGTGCTCTGTAAAAACGGCCT
CGATTCCCTTGTTCATGACCTGTTCCTCAAGTCCTTGGAGGAAACGTTTGAGAGTCAAGGAGCATTGAGATTTTGGCGGCATTTAGATGCGTATAAGGAT
GACTGGACGCAGAAGAATAGTAAGAAGAGAATTCCAGTTGATGGAAGTGAAGTGCAGCGAGTTTTGTGTAAAGCTCTGGAGGAAATATCATGTGTTAAAC
AGTATCAAGAGAAGTGCTTGATGATGTTAGTTGATGGTTTGGAACGAGATGGGGAAAGGCGATATCTTTGCTCCAAATATCAATTGATGGTTTCTTCGGT
TCTTATGGCCAGCCTTCCTCGGCATTTTCCTGAGATACTGCACTCGTATTTTAAGGGAAAGCTAGAGGAACTTAGTACGATTATGGAGGGAGAGAATGAT
GGAGAGGAGGAATCTGAGGAGGAGGATGAAATGGAATTGGATGAGAAGGGAAAACCATCTTACAGAAATGGTGCTATGGATGTTGATGGATTTTCTCCCA
TGGGTAAGTTCACTGAGAATAACAAATTGGTGAAGAACATAGGGAAGGTCGTTCGTCATCTCAGAAGTCTTGGGTTTACGTCTATGACTGAAGATGCCTA
TGCTTCTGCTATCTTTCTACTTCTGAAGGACAAAGTAGATGATCTGGCTGGTGATGATTACAGAGGTTCAGTTTTGGAGTCTATCAAACAGTGGATTCAG
GCTGTCCCTCTTCAATTCTTGAGTGCTCTTCTGGCTTATCTTGGCGATTCCACTAGCCACATCAGTTCTTCGCCAAGCGTAAAATCGCCTCTGGCTTCTC
AGTATTCCCCGCAGTATCCTGGAAGCAATGTGCCTTCTGAGGGACTCATTCGATGGCAATTACGGCTGGAGTACTTTGCTTATGAGACATTGCAAGACTT
GAGAATAGCCAAACTGTTTGAGATTATTGTTGACTATCCTGACAGTTCTCCTGTTATTGAGGACTTGAAACAATGCCTAGAATATACAGGACAACATTCT
AAGCTGGTGGAGTCCTTTATTTCAGCACTTCGATATCGTTTACTCACTGCGGGTGCTTCAACCAATGATATATTGCACCAGTATGTCTCAACCATTAAGG
CGTTACGAACAATTGATCCTACTGGGATCTTTCTTGAAGCTGTTGGTGAACCAATAAGAGATTACTTAAGGGGTCGGAAGGACACTATAAAATGCATTGT
AACGATGCTTACAGATGGAAGTGGAGGAAATGCCGCTGCATCTGGGATCGCTGGGGATAGCCTACTTGAAGAATTGAACAGGGATGAGGAAGGACAGGAG
AATAATGGTGCTGATGATGACTTCAGTGCCGATGACAAGCAAGCTTGGATAAATGCTGCTAACTGGGAACCGGATCCTGCTGAGGCTGATCCATTAAAGG
GAAGCAGGAACCAGAGGAAAGTTGATATTTTAGGGATGATAATTAGCATAATCGGTTCAAAAGACCAACTTGTCAATGAATACCGTGTGATGCTAGCTGA
AAAGCTTCTCAGCAAATCTGAATATGATATTGCCTCAGAAATTCGTACTTTAGAACTCCTCAAGGCAAGGATAGAGCAACAGGAAATGGGGGCAACTATG
GATAATCTTAGTGCTACAATCATCTCCTCTAATTTCTGGCCTCCAATTCAGGATGAGGACCTTACTTTACCCCCACCAGTTGATCAGCTCCTCACCGATT
ATGCAAACCGGTATCACGAACTTAAGACTCCTCGTAAACTGCTATGGAAGAAGAATCTCGGCACTGTCAAGCTGGAGTTGCAATTTGAAGACAGAGAAGT
TCAATTTACTGTAACTCCGATACATGCTGCAATTATCATGCAATTCCAAGATCAAACAAGTTGGACCTCTAACCAGCTTGCCAATACCCTCGGTGTACCA
GTGGATGGAATCATAGCTGAATCACTTGGTACAGAACCCAACGACAACGTCTTTACTCTGGTTGAAAGTAATGCTGATGCTGGTAAGAATGCTGGCGTTA
TTGGCACTTGTGAGGAGTTGTTACCTGGTGATGACGAAGGAGAGAGTTCCGTGGCGTCCGTTGAGGACCAATTACGCAAGGAGATGACTGTTTACGAGGT
ATCCGACTCGTCTCATTTGGACCAACTAGTGAACACCGGAGCTGAAAAATTGATGTCTGAACTTTTTTTTCAGCAATATATAATGGGAATGCTCAAAAAT
TTCGGTAGCATGGCTCTGGACCGCATTCATCACACTCTCAAGATATTTTGTGTCGCGGATGCCCCCTACGATAAGTCACTGCAACAGCTGCAGAGCTTTT
TATCAGGCTTGGTCTTGGAAGAGAAGGTTGAACTAAGAGATGGAATGTACTTTTTGAAGAAGTAA
AA sequence
>Lus10030444 pacid=23140554 polypeptide=Lus10030444 locus=Lus10030444.g ID=Lus10030444.BGIv1.0 annot-version=v1.0
MEESSTTQSVCNFYVLDALSRDSIQEILDSYNGFCSTSETLLSSTSSDVSVGREFVSHARVLCKNGLDSLVHDLFLKSLEETFESQGALRFWRHLDAYKD
DWTQKNSKKRIPVDGSEVQRVLCKALEEISCVKQYQEKCLMMLVDGLERDGERRYLCSKYQLMVSSVLMASLPRHFPEILHSYFKGKLEELSTIMEGEND
GEEESEEEDEMELDEKGKPSYRNGAMDVDGFSPMGKFTENNKLVKNIGKVVRHLRSLGFTSMTEDAYASAIFLLLKDKVDDLAGDDYRGSVLESIKQWIQ
AVPLQFLSALLAYLGDSTSHISSSPSVKSPLASQYSPQYPGSNVPSEGLIRWQLRLEYFAYETLQDLRIAKLFEIIVDYPDSSPVIEDLKQCLEYTGQHS
KLVESFISALRYRLLTAGASTNDILHQYVSTIKALRTIDPTGIFLEAVGEPIRDYLRGRKDTIKCIVTMLTDGSGGNAAASGIAGDSLLEELNRDEEGQE
NNGADDDFSADDKQAWINAANWEPDPAEADPLKGSRNQRKVDILGMIISIIGSKDQLVNEYRVMLAEKLLSKSEYDIASEIRTLELLKARIEQQEMGATM
DNLSATIISSNFWPPIQDEDLTLPPPVDQLLTDYANRYHELKTPRKLLWKKNLGTVKLELQFEDREVQFTVTPIHAAIIMQFQDQTSWTSNQLANTLGVP
VDGIIAESLGTEPNDNVFTLVESNADAGKNAGVIGTCEELLPGDDEGESSVASVEDQLRKEMTVYEVSDSSHLDQLVNTGAEKLMSELFFQQYIMGMLKN
FGSMALDRIHHTLKIFCVADAPYDKSLQQLQSFLSGLVLEEKVELRDGMYFLKK

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G04660 APC2 anaphase-promoting complex/cyc... Lus10030444
[exp]
0 1
AT5G43990 SDG18, SUVR2 SET DOMAIN PROTEIN 18, SET-dom... Lus10022879
[exp]
1.0 0.9274
AT3G44530 HIRA homolog of histone chaperone H... Lus10004893
[exp]
3.9 0.9209
AT1G14650 SWAP (Suppressor-of-White-APri... Lus10025704
[exp]
4.9 0.9164
AT2G31320 ATPARP2 poly(ADP-ribose) polymerase 2 ... Lus10033871
[exp]
5.3 0.9269
AT4G10070 KH domain-containing protein (... Lus10002947
[exp]
8.1 0.9016
AT2G28070 ABCG3 ATP-binding cassette G3, ABC-2... Lus10041333
[exp]
12.5 0.8789
AT1G63020 SMD2, PolIVa, S... SILENCING MOVEMENT DEFICIENT 2... Lus10006339
[exp]
14.4 0.8647
AT5G43130 TAF4, TAF4B TBP-associated factor 4B, TBP-... Lus10033265
[exp]
14.7 0.8686
AT3G48430 JUMONJI JMJ12, REF6 Jumonji domain-containing prot... Lus10019482
[exp]
16.1 0.9073
AT5G36740 Acyl-CoA N-acyltransferase wit... Lus10022053
[exp]
16.6 0.8803

Lus10030444 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.