Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03150 363 / 1e-104 EMB1579 embryo defective 1579, ATP/GTP-binding protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026618 [exp] 1146 / 0 AT2G03150 355 / 3e-102 embryo defective 1579, ATP/GTP-binding protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G166100 [exp] 475 / 7e-144 AT2G03150 368 / 4e-106 embryo defective 1579, ATP/GTP-binding protein family (.1) Potri.008G089100 [exp] 44 / 0.0001 AT2G04660 0 / 1 anaphase-promoting complex/cyclosome 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030445 pacid=23140692 polypeptide=Lus10030445 locus=Lus10030445.g ID=Lus10030445.BGIv1.0 annot-version=v1.0 ATGTATTCGAGAGGTAATGGGTATGGGCAGCAATCGTATGGTGGGCAGTCTAGCTACGCTCAAAGTTTAGCAAATGCGTATTCTGCTAGCTCTGTCGGAG GAACGGATTCGAGTTCTCAACATTCGCTGGCTTCTAGGCATCCTTCATTGTTGAGTAGTTCTCAGGAAGCGGATCTTGCTACTGGGTATAGAAGCCACAA CTCGGTTTCGGGGCACTATGGTGGGCAGTATGCATCTCTATATGGTTCAGCTGGTGGAGTGAGTGCTACTCAACAGGTACCCTCAGCGAGTACCAAGGGA AGTGGGCTATCGGGTTTGGAAGGCCGTAGAGGCTATTCTTCAGCTGTGTCCGATTCACCTAAATTTGGATCGGGCGACTATGTTCCTTCTTCAACCCATA CATATGGACACAAAAGTGATCCATTGTACTCAGACAAGATCGCTGATTACACTGGAATAGACCGCAGGCATTATGGCGAGCAGAGTTCATATACCGGCAG GGACTTGCAAACTGATCCTGCTTCACGGTATACAGATTCTGTTGGCTTGAGTCATCAACGTCAGCAGACTGACAGATATGATCGTCTGGATCAGTCCTCG ATTCTGCGGCAAGAGCAGTTGTTGAAATCACAATCAATTCACTCTACATCTCTTGATGGAGGTTCCAGACCGCTCGATTATCTAGCAGCAAGAGGGGGCG CCAGTCGTCATCTCAACCAGGATCTCGCGTCTTATGGCAGACGAGTGGATGCTGATCCTCGTGGCTCCTCAATTCTTAATGCTTCTTCTTACAACACGAC ACCTGCTTCATCAATATTAGGGGCAGCTCCACGAAGGAACGTTGATGATCTTCTATATTCCCAAAGTTTGACGAATCCAGGCTATGGTGTTAGCCTTCCT CCCGGTAGAGATTATGGTTCAGGAAAAGCCGCGTTGCAGCAGGGAACATCACTCGATGCGGAATATCGTGCTCTTCATCCGAGGATTGAAGAAAATCGCA GGGATGAAAGAGCCGGCTATCTTCGGGAGTTTGAGCTGCGAGAGGATGAACGTCGTCGAGAGTTCTTGCGTGAGAGGGAAAAAGAACGGGAGAGGGAACG AGAAAGGGAGAAGGAAAGGGACCGGGATCGTGAAAGGGAACGAGAACGAGAACGGAGGCGCGACCGGGAGCGCATGTTGGAGCGGCGGGAGAAGGAGCGG GAGAGGAAGCGCGCAATTGAAATTAGACGAGAACGAACTCCGCAGAGGCCTTCAAGGGATCCTCGTGGATCCTCTGTGACAAAGGAAGGACGATCCTTGC GACGCGATTCAATAAGCCAAGACGCTTCACATAGGCGTCATTCACCTGTTAAAGATAAACGGAGGGAATATGTCTGCAAGGTACATGGTTCCTGTTTGGT TGACTTAGAGAGAGACTATTTGTCGCTGGATAAGAGATACCCCAGACTCTTTGTGTCACCGGAGCTTTCTAAGGTTGTTGTCAATTGGCCAAAGGAGAAT TTCAAGCTTTCGATACATACCCCTGTGAGTTTTGAGCATGATTTTGTGGAAGAGGAAAATGCTTTGGAGTCTAAGGACCTCTCCAGCAACCTCTTGGGGC ATCATGATCTTAGTCAGTCAGCGAGTGGACGCACAGTATGGAACGCTAAGATAATTTTGATGAGTGGAGTGAGCAAAAGCGCTTTTGAGGTGCTGTCATC TGCGAAGATCGCTGATGATCGCCCACCTCATATTTGTAACATACTTAGATTTGCGGTGCTTAAGAAGGATCGTGCTTTTATGACAATCGGTGGGCCTTGG GATCCTATTGATGGCGGTTATCCATCCGTTGATGATTCTCCTTTGATTCAAACAGCACTAAGATATGCAAAGGATGTTACCCAACTTGATCTCGGGAACT GTCGTCAGTGGAATCGGTTTCTTGAGGTACAGTACAACCGATTTGGAAAGGACGGGTTATTTAGTCATAAGGAGGTCACCGTTCTGTTTGTTCCTGATTT GTCTGAATGTCTTCCTTCACTTGAATCGTGGAGAGACCAGTGGCTTGCACATAATAAGACTGTTTCCGACAGAGAGCGCGAGCTTTCTCTGAAAAAAGAG AGATCTGCTGAAAAGAAGGAAGGTTCTAAAGGATCAGACCCTTCAAAAGATCCGAAACAAGGAATCAAACAAGAAAAGACCAAAGCATCTGTCTCTTCTG GTTCCAACAAAAAGGAGAATGCTTCCAAGGACAAGACTGTATCCCCGAAGGATGCCGAAAGTAAAATGGACGAGGGGAACTTATCCAAGGATGTCTCGAA AGATGAGCAGGGTGAACCGTCCAGTACTCCGACATCTGCTGGTGCAAAAACAGGGAAAAAAACAGGGAAAAAGAGGATTGTTAAGAGAATTGTAAAGAAA AAGGCGGTTGCCAAGCCAGGTGGCGGTGTTGCTGCTGCCGGTGCAGCAACGAACAATTCGTCGAGTGGAGAGAAACCTGCTGAAAGTGAAGATAAGGGCT TAGTAGAACCTGAAGGGAAAGGTGAGGTGACACCTCAACCAGTAGAGAAGAAACCAAAGGATAAATCAGAACCCAACTCCGGAGGGACTGGGTCAGCTGC TAGTGTTAAAACAGCTGTTAAGAAAAAGATTATCAAGCGGGTGCTTAAGAGAAAGCTCACGCCGAACAAGGAAGCTACTGATGGAACTACTGGCACAGTT ACGGAAGAGAAGAAGGTTGCTTCGGAAGCCAAGGAAACTGAAAATGCCGGGAATCAAGTTGAAGGCAATAGCGAGAATGCTAACAAAGTAACTCCTGCGG CATCTTTGAAATCTCCAGAGAAGCAAGTGAGTGTGCCAAAGGCGAGTAAACCAGAAAGTAGCAAGGCCGTCAAGGAAGATAAGGACGAAAAGAAGCCTGA AGGGAAGAATGGTACCGGAACCGGTTTGGAGGTTAAGGGTGAGAAGCCAAAGGGCGCTGAGAAGGATAATAATAATACTGGCAAGAAAGGGGCATCAGTG GATGAACAGAAAGCAAAGGTTGAGAAAAAGGATAAGAATGGGAAAGATCAACAACCAAGGAGTAGGTCTCCTAAGGAAATGAAAGAGAAGAAAAAATCTG AAGAGCCACCGAGACACCCTGGATTGATTTTGCAGACGAAATGCGACAAGAGAACTATGCTGTACTCATTATCTCTTTCTCTGGACTCGCTTTTGGATTA CACGGAACAGGACACCGACGAATCGACAATTGAGCTTTCTTTATTTGCGGAATCCATGCATGAAATGCTTCAGTATCAGATGGGTAGTCGTCTGCTAGAT TTCCTTCAGAAACTTCGCGTTAAATTTGTTGCAAAGAGGAATCAAAGGAAACGGCAGCTTGATGTGGAAAAGGAAGCAAAGGACAAAGATGACAAATCTT CGTCGAAGCGCCAAAAAACCAGCGAGTTTCCTGTGAAGAAAGAATCCGGAACTGAAACGTCGGATGCAACAAACCAACCAGACGAACCGAAAACTACAAA AGAGGATACTTTAGTTCAAAATGAGGTGAAGGCTCAAAATGACGTAGAAGATGAAGAAGAAGAAGATCCAGACGCAGATCCGGATGAGGATCCAGATGTG GACCCGGATGAGGATCCAGATGAGGACCCGGATGTGGATCCAGATGAAGATCCGGACGAAGATCCTGAACCTGAAGGAGATGCAGAAATGGAGGATGCTG AGCAAATTGTAGCCAGCGATCAGAAAGATAAAAAGGAAGCAGCAAAAGCCACTAGTGCCGACGGTGGAAAAACAGTTGTTGCGGCTGTAAATGAAGCTGG GAAAGATAGTGAAATGAAAGATGCGGAGCCAAAAGTCAAGCAAGAACCAGATTCCTCCGAGAAAGTCAACTTGGAAGCCGAGAAGAAGAAGAAAGAGTCT TCTTCAGCTGTTAAGGAGCCAGTGGTTAATACGGAGCTTCTGCAGGCGTTCAGGTTTTTCGATCGGAATCTAGCTGGGTTCATCAGGGTTGAGGATATGA GGTTAATCATCCACACCCTGGGGAAGTTCCTCTCTCACAGAGACGTAAAGGATCTTGTTCAGAGTGCATTGCTGGAGAGCAACACCGGGAGGGACGACCG GATCCTCTATAACAAGCTTGTGAGGATGAATCTGTAG
AA sequence Show only first row Show all	>Lus10030445 pacid=23140692 polypeptide=Lus10030445 locus=Lus10030445.g ID=Lus10030445.BGIv1.0 annot-version=v1.0 MYSRGNGYGQQSYGGQSSYAQSLANAYSASSVGGTDSSSQHSLASRHPSLLSSSQEADLATGYRSHNSVSGHYGGQYASLYGSAGGVSATQQVPSASTKG SGLSGLEGRRGYSSAVSDSPKFGSGDYVPSSTHTYGHKSDPLYSDKIADYTGIDRRHYGEQSSYTGRDLQTDPASRYTDSVGLSHQRQQTDRYDRLDQSS ILRQEQLLKSQSIHSTSLDGGSRPLDYLAARGGASRHLNQDLASYGRRVDADPRGSSILNASSYNTTPASSILGAAPRRNVDDLLYSQSLTNPGYGVSLP PGRDYGSGKAALQQGTSLDAEYRALHPRIEENRRDERAGYLREFELREDERRREFLREREKEREREREREKERDRDRERERERERRRDRERMLERREKER ERKRAIEIRRERTPQRPSRDPRGSSVTKEGRSLRRDSISQDASHRRHSPVKDKRREYVCKVHGSCLVDLERDYLSLDKRYPRLFVSPELSKVVVNWPKEN FKLSIHTPVSFEHDFVEEENALESKDLSSNLLGHHDLSQSASGRTVWNAKIILMSGVSKSAFEVLSSAKIADDRPPHICNILRFAVLKKDRAFMTIGGPW DPIDGGYPSVDDSPLIQTALRYAKDVTQLDLGNCRQWNRFLEVQYNRFGKDGLFSHKEVTVLFVPDLSECLPSLESWRDQWLAHNKTVSDRERELSLKKE RSAEKKEGSKGSDPSKDPKQGIKQEKTKASVSSGSNKKENASKDKTVSPKDAESKMDEGNLSKDVSKDEQGEPSSTPTSAGAKTGKKTGKKRIVKRIVKK KAVAKPGGGVAAAGAATNNSSSGEKPAESEDKGLVEPEGKGEVTPQPVEKKPKDKSEPNSGGTGSAASVKTAVKKKIIKRVLKRKLTPNKEATDGTTGTV TEEKKVASEAKETENAGNQVEGNSENANKVTPAASLKSPEKQVSVPKASKPESSKAVKEDKDEKKPEGKNGTGTGLEVKGEKPKGAEKDNNNTGKKGASV DEQKAKVEKKDKNGKDQQPRSRSPKEMKEKKKSEEPPRHPGLILQTKCDKRTMLYSLSLSLDSLLDYTEQDTDESTIELSLFAESMHEMLQYQMGSRLLD FLQKLRVKFVAKRNQRKRQLDVEKEAKDKDDKSSSKRQKTSEFPVKKESGTETSDATNQPDEPKTTKEDTLVQNEVKAQNDVEDEEEEDPDADPDEDPDV DPDEDPDEDPDVDPDEDPDEDPEPEGDAEMEDAEQIVASDQKDKKEAAKATSADGGKTVVAAVNEAGKDSEMKDAEPKVKQEPDSSEKVNLEAEKKKKES SSAVKEPVVNTELLQAFRFFDRNLAGFIRVEDMRLIIHTLGKFLSHRDVKDLVQSALLESNTGRDDRILYNKLVRMNL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03150		EMB1579	embryo defective 1579, ATP/GTP...		Lus10030445 [exp]	0	1
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10024895 [exp]	1.4	0.9184
AT3G04820			Pseudouridine synthase family ...		Lus10015931 [exp]	3.2	0.8905
AT1G05910			cell division cycle protein 48...		Lus10025576 [exp]	4.2	0.8847
AT1G05910			cell division cycle protein 48...		Lus10027038 [exp]	4.5	0.8980
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Lus10012968 [exp]	5.7	0.8852
AT4G21660			proline-rich spliceosome-assoc...		Lus10018475 [exp]	5.7	0.8816
AT2G39670			Radical SAM superfamily protei...		Lus10000953 [exp]	6.0	0.8808
AT5G25800			Polynucleotidyl transferase, r...		Lus10029748 [exp]	6.2	0.8765
AT3G21430	MYB	ATALY3	ARABIDOPSIS THALIANA ALWAYS EA...		Lus10002879 [exp]	8.4	0.8863
AT5G25060			RNA recognition motif (RRM)-co...		Lus10026251 [exp]	8.9	0.8663

Compare expression of checked genes

Lus10030445 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.