Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18720 234 / 6e-79 Protein of unknown function (DUF962) (.1) AT1G74440 218 / 2e-72 Protein of unknown function (DUF962) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036771 [exp] 299 / 2e-104 AT1G18720 250 / 3e-85 Protein of unknown function (DUF962) (.1) Lus10001646 [exp] 205 / 3e-67 AT1G18720 246 / 3e-83 Protein of unknown function (DUF962) (.1) Lus10021661 [exp] 203 / 1e-66 AT1G18720 242 / 8e-82 Protein of unknown function (DUF962) (.1) Lus10021660 [exp] 152 / 2e-46 AT1G18720 174 / 3e-55 Protein of unknown function (DUF962) (.1) Lus10037158 [exp] 113 / 3e-32 AT1G18720 92 / 2e-24 Protein of unknown function (DUF962) (.1) Lus10001647 [exp] 41 / 6e-05 AT1G18720 62 / 7e-13 Protein of unknown function (DUF962) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G088800 [exp] 281 / 3e-97 AT1G18720 245 / 4e-83 Protein of unknown function (DUF962) (.1) Potri.010G166500 [exp] 251 / 2e-85 AT1G18720 251 / 2e-85 Protein of unknown function (DUF962) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06127 [flax] [poplar] DUF962 Protein of unknown function (DUF962)
Representative CDS sequence Show only first row Show all	>Lus10030447 pacid=23140591 polypeptide=Lus10030447 locus=Lus10030447.g ID=Lus10030447.BGIv1.0 annot-version=v1.0 ATGGCGAGGTTGTGTTCATCATTGTTCGATCTAGAGCGGCACTTCGCCTTCTACGGAGCATACCACAGCAACTCAACCAACATTCTGATCCACATGGTGT TCGTATGGCCGATTCTCTTCACTGCCCAGCTAATCCTCTACTTCACCCCTGCTTTCATCCCCGACAAGGTTGAGTTCTCCCTCTTCGGAATCGATGCTTT CCTCGTATTCAACGTTGGATTCTTGCTCACCTTGATCTATGGCGCTTTCTACATCTGTCTGGATAAGAAAGCTGGCTCCTTGGCTGCTGTGTTGCTTGTT CTGTGTTGGTTGGGTTCTAGCTTCTTGGGTTCCTGGCTTGGCTTCTCCATCTCTTGGAAGGTGGTTGTGGTTGCTCAGATTGTATGCTGGACTGGACAGT TCATAGGACATGGAGTCTTTGAGAAACGAGCACCGGCGCTCTTGGACAACCTCATTCAGGCCTTTCTAATGGCTCCATTCTTTGTGCTGTTGGAGGCTTT GCAAACCTTCTTTGGTTATGAACCCTACCCTGGATTCAAAGCAACTGTTCAAGCTAAAGTTGATGCTGAAATCCTTGAGTGGCAGGAGAAGAAGCAGAAG TTGCTTCAGTAG
AA sequence Show only first row Show all	>Lus10030447 pacid=23140591 polypeptide=Lus10030447 locus=Lus10030447.g ID=Lus10030447.BGIv1.0 annot-version=v1.0 MARLCSSLFDLERHFAFYGAYHSNSTNILIHMVFVWPILFTAQLILYFTPAFIPDKVEFSLFGIDAFLVFNVGFLLTLIYGAFYICLDKKAGSLAAVLLV LCWLGSSFLGSWLGFSISWKVVVVAQIVCWTGQFIGHGVFEKRAPALLDNLIQAFLMAPFFVLLEALQTFFGYEPYPGFKATVQAKVDAEILEWQEKKQK LLQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18720			Protein of unknown function (D...		Lus10030447 [exp]	0	1
AT1G52330			Late embryogenesis abundant (L...		Lus10037534 [exp]	3.2	0.8837
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10011748 [exp]	3.5	0.8590
AT5G15870			glycosyl hydrolase family 81 p...		Lus10021987 [exp]	5.2	0.8519
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10020589 [exp]	7.7	0.8115
AT5G17280			unknown protein		Lus10028356 [exp]	8.4	0.8222
AT1G11050			Protein kinase superfamily pro...		Lus10012701 [exp]	8.9	0.8353
AT5G53120		SPMS, SPDS3, AT...	spermidine synthase 3 (.1.2.3....		Lus10003398 [exp]	10.4	0.8456
AT5G40470			RNI-like superfamily protein (...		Lus10022269 [exp]	10.5	0.8512
AT1G21380			Target of Myb protein 1 (.1)		Lus10018948 [exp]	13.2	0.8001
AT5G58320			Kinase interacting (KIP1-like)...		Lus10019111 [exp]	13.3	0.8300

Compare expression of checked genes

Lus10030447 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.