Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69530 268 / 2e-91 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT2G03090 259 / 9e-88 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT1G26770 258 / 2e-87 ATHEXPALPHA1.1, AT-EXP10, ATEXP10, ATEXPA10 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2) AT5G56320 239 / 4e-80 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT2G40610 233 / 8e-78 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1) AT2G39700 231 / 1e-76 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT3G29030 230 / 1e-76 ATEXP5, ATHEXPALPHA1.4, ATEXPA5 ARABIDOPSIS THALIANA EXPANSIN A5, ARABIDOPSIS THALIANA EXPANSIN 5, expansin A5 (.1) AT5G02260 229 / 4e-76 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT3G55500 226 / 6e-75 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT2G37640 223 / 1e-73 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026614 [exp] 283 / 2e-97 AT1G69530 431 / 7e-155 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10036763 [exp] 280 / 6e-96 AT1G69530 426 / 3e-153 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10037164 [exp] 278 / 3e-95 AT1G69530 420 / 2e-150 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10034227 [exp] 243 / 1e-81 AT2G40610 416 / 7e-149 expansin A8 (.1) Lus10009917 [exp] 243 / 2e-81 AT2G40610 395 / 9e-141 expansin A8 (.1) Lus10008603 [exp] 243 / 2e-81 AT2G40610 397 / 2e-141 expansin A8 (.1) Lus10033011 [exp] 242 / 5e-81 AT3G29030 389 / 2e-138 ARABIDOPSIS THALIANA EXPANSIN A5, ARABIDOPSIS THALIANA EXPANSIN 5, expansin A5 (.1) Lus10042214 [exp] 241 / 1e-80 AT2G40610 393 / 7e-140 expansin A8 (.1) Lus10029038 [exp] 225 / 2e-74 AT2G40610 418 / 6e-150 expansin A8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G167200 [exp] 273 / 3e-93 AT1G69530 335 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.008G088300 [exp] 269 / 9e-92 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.004G123200 [exp] 261 / 1e-88 AT1G69530 334 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.001G001100 [exp] 255 / 2e-86 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1) Potri.013G060800 [exp] 253 / 2e-85 AT2G03090 356 / 1e-125 EXPANSIN 15, expansin A15 (.1) Potri.019G057500 [exp] 253 / 2e-85 AT2G40610 374 / 2e-132 expansin A8 (.1) Potri.017G085300 [exp] 251 / 3e-85 AT1G26770 355 / 5e-125 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2) Potri.013G154700 [exp] 249 / 6e-84 AT2G40610 348 / 2e-122 expansin A8 (.1) Potri.016G135200 [exp] 237 / 3e-79 AT2G40610 400 / 6e-143 expansin A8 (.1) Potri.006G108000 [exp] 234 / 6e-78 AT2G40610 379 / 2e-134 expansin A8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10030449 pacid=23140682 polypeptide=Lus10030449 locus=Lus10030449.g ID=Lus10030449.BGIv1.0 annot-version=v1.0 ATGGCGGCCACCGCAGCCGGATACGGCGGAGGAGGAGGCGGAGGATGGGTCAACGCTCACGCAACTTTCTACGGCGGTGGTGATGCTTCTGGCACAATGG GCGGAGCTTGTGGGTATGGGAATCTGTACAGCCAGGGATACGGGACGAACACTGCAGCTTTGAGCACGGCTCTGTTCAACAATGGACTTGCTTGTGGGTC CTGCTACGAGATTAAGTGTGTCAACGACGGGAAATGGTGCTTGCCGGGCTCGATTCTCATCACGGCGACCAACTTCTGCCCGCCGAACAATGCTCTGCCC AACAACGCCGGCGGCTGGTGCAACCCACCTCAGCACCACTTTGACCTCTCTCAGCCTGTGTTCCAGCACATTGCTCAGTACAAGGCCGGAATCGTCCCCG TCGCCTACCGCCGGGTTGCATGCAGGAGAAGAGGAGGCATTAGGTTCACAATCAATGGCCACTCATACTTCAACCTGGTCTTGATCACCAACGTTGGTGG AGCTGGTGATGTCCACTCTGTGTCGATCAAGGGCTCGAAAACCGGATGGCAAGCCATGTCTAGGAACTGGGGGGAGAATTGGGAGAGCAACAAATACCCC AATGTAGTAAAGTAG
AA sequence Show only first row Show all	>Lus10030449 pacid=23140682 polypeptide=Lus10030449 locus=Lus10030449.g ID=Lus10030449.BGIv1.0 annot-version=v1.0 MAATAAGYGGGGGGGWVNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLACGSCYEIKCVNDGKWCLPGSILITATNFCPPNNALP NNAGGWCNPPQHHFDLSQPVFQHIAQYKAGIVPVAYRRVACRRRGGIRFTINGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGENWESNKYP NVVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10030449 [exp]	0	1
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10000091 [exp]	4.7	0.8176
AT4G00231		MEE50	maternal effect embryo arrest ...		Lus10020777 [exp]	5.5	0.8019
AT4G00231		MEE50	maternal effect embryo arrest ...		Lus10007356 [exp]	7.6	0.8105
AT4G26680			Tetratricopeptide repeat (TPR)...		Lus10009548 [exp]	12.6	0.7994
AT3G18310			unknown protein		Lus10023992 [exp]	14.3	0.7922
AT4G02720			unknown protein		Lus10042601 [exp]	18.2	0.7824
AT1G75580			SAUR-like auxin-responsive pro...		Lus10024326 [exp]	19.6	0.7333
AT2G31240			Tetratricopeptide repeat (TPR)...		Lus10003563 [exp]	24.8	0.7812
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10040648 [exp]	25.0	0.7378
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10023140 [exp]	25.9	0.7564

Compare expression of checked genes

Lus10030449 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.