Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03050 283 / 2e-95 SOLDAT10, EMB93 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) AT2G34620 194 / 4e-60 Mitochondrial transcription termination factor family protein (.1) AT2G36000 145 / 3e-41 EMB3114 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) AT3G18870 130 / 8e-36 Mitochondrial transcription termination factor family protein (.1) AT4G14605 107 / 7e-26 Mitochondrial transcription termination factor family protein (.1) AT1G78930 103 / 1e-24 Mitochondrial transcription termination factor family protein (.1) AT2G21710 92 / 9e-21 EMB2219 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) AT5G55580 91 / 4e-20 Mitochondrial transcription termination factor family protein (.1) AT4G38160 87 / 3e-19 PDE191 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) AT2G44020 74 / 1e-14 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026612 [exp] 587 / 0 AT2G03050 285 / 4e-96 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) Lus10032120 [exp] 169 / 2e-50 AT2G34620 300 / 2e-101 Mitochondrial transcription termination factor family protein (.1) Lus10014567 [exp] 167 / 2e-49 AT2G34620 300 / 6e-101 Mitochondrial transcription termination factor family protein (.1) Lus10021297 [exp] 166 / 4e-49 AT2G36000 264 / 8e-87 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10029422 [exp] 163 / 9e-48 AT2G36000 294 / 3e-98 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10016971 [exp] 162 / 1e-47 AT2G36000 271 / 2e-89 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10004219 [exp] 161 / 5e-47 AT2G36000 293 / 8e-98 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10026325 [exp] 115 / 8e-30 AT3G18870 278 / 3e-93 Mitochondrial transcription termination factor family protein (.1) Lus10042342 [exp] 113 / 4e-29 AT3G18870 276 / 1e-92 Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G167400 [exp] 315 / 8e-108 AT2G03050 303 / 3e-103 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) Potri.011G081400 [exp] 198 / 7e-62 AT2G34620 392 / 5e-138 Mitochondrial transcription termination factor family protein (.1) Potri.016G072200 [exp] 142 / 1e-39 AT2G36000 280 / 1e-92 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Potri.006G205000 [exp] 141 / 2e-39 AT2G36000 284 / 2e-94 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Potri.004G150600 [exp] 114 / 7e-30 AT3G18870 311 / 1e-106 Mitochondrial transcription termination factor family protein (.1) Potri.008G088100 [exp] 103 / 9e-28 AT2G03050 117 / 7e-34 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) Potri.017G067600 [exp] 111 / 2e-27 AT4G14605 571 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.007G001800 [exp] 109 / 1e-26 AT1G78930 633 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.001G361800 [exp] 95 / 1e-21 AT5G55580 584 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.004G209400 [exp] 91 / 1e-20 AT4G38160 481 / 3e-172 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10030451 pacid=23140589 polypeptide=Lus10030451 locus=Lus10030451.g ID=Lus10030451.BGIv1.0 annot-version=v1.0 ATGCTTATCAATGGCGGACCAATACAGCTCTTTGCTTCTCTGCCGCCACTCAGTAACCAAATCCAAATCTGCGGAGCAGCAAGTCTGGAAACTCTAACCA CCGCCACACCGCCGCCGCGGGACGCCGGAATACTCTTCCGCAAGAAGCTAATCTACCTCGCAAACCTCAAAATCGACGTCCGAAAAGCCCTAACCGTAAA CCCTGACATCCGCTCCACTCCAATCACCGCCTTCCACTCCGTCGAGCAGTGCCTCTCCTCCATGGGACTCCACCGCCGCGCAATCGGGAGAATCCTCGAC ATGTACCCGACCATCCTCACCTTCGATTCATACGGCGACATATACCCGGTCTTCGATTTCCTCCTCCACGAGGTGGGCATCGAGTACCGCGAGATCCACA AGTCAATTTCGCGGTGCCCTAGGTTACTGACGTGTAGCCTGGAGTGTCAATTGAGGCCTGCGTTTGAGTTTCTGGAATCGGTGGGGTTTGTTGGGAAGCA CCGTCTTACTCCTCAGACGACGTGTCTGTTGGTTTACAATGTGGAGAATACGCTGAAGAGGAAGATGTCGTGGTTGAAAGGGTTGGGTATTGAGGATAGT GAGGTGGCAACTATGGTGATTAGGACTCCAGGGCTGTTTACGTTTAGTGTAGAGAATAATCTGGTGCCGAAATTCGAGTTCTTCGTGAAGGAAATGAAGG GGAATGTGGAGGAGTTGAAGAGCTTTCCTCAGTTGTTTTGTTATAGTTTGGAAGGCAGGATCAAGCCTAGGCATAGGATGTTGGCAGAGCTTGGGATTCG GCTTCCTGTGTCGAAGATGTTGAGGGTTAACGATTGGGAGTTCGATAGGCGGTTGAGTAAGATCAGGCTCGGTGAAGCTACAGAGGTGTTAGATTCATGG ACATAA
AA sequence Show only first row Show all	>Lus10030451 pacid=23140589 polypeptide=Lus10030451 locus=Lus10030451.g ID=Lus10030451.BGIv1.0 annot-version=v1.0 MLINGGPIQLFASLPPLSNQIQICGAASLETLTTATPPPRDAGILFRKKLIYLANLKIDVRKALTVNPDIRSTPITAFHSVEQCLSSMGLHRRAIGRILD MYPTILTFDSYGDIYPVFDFLLHEVGIEYREIHKSISRCPRLLTCSLECQLRPAFEFLESVGFVGKHRLTPQTTCLLVYNVENTLKRKMSWLKGLGIEDS EVATMVIRTPGLFTFSVENNLVPKFEFFVKEMKGNVEELKSFPQLFCYSLEGRIKPRHRMLAELGIRLPVSKMLRVNDWEFDRRLSKIRLGEATEVLDSW T

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03050		SOLDAT10, EMB93	SINGLET OXYGEN-LINKED DEATH AC...		Lus10030451 [exp]	0	1
AT2G36350			Protein kinase superfamily pro...		Lus10035591 [exp]	1.4	0.9181
AT3G26782			Tetratricopeptide repeat (TPR)...		Lus10031989 [exp]	2.4	0.8973
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10023240 [exp]	2.4	0.8682
AT2G35540			DNAJ heat shock N-terminal dom...		Lus10027316 [exp]	5.3	0.8712
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Lus10017973 [exp]	6.7	0.8589
AT3G53940			Mitochondrial substrate carrie...		Lus10021497 [exp]	7.7	0.8695
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Lus10001601 [exp]	12.2	0.8183
AT5G56590			O-Glycosyl hydrolases family 1...		Lus10034987 [exp]	12.7	0.8474
AT5G21030			PAZ domain-containing protein ...		Lus10025537 [exp]	15.8	0.8794
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Lus10010577 [exp]	16.7	0.8640

Compare expression of checked genes

Lus10030451 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.