Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03050 1553 / 0 RHD7, ATCSLD3, KJK, CSLD3 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) AT5G16910 1533 / 0 ATCSLD2 cellulose-synthase like D2 (.1) AT4G38190 1357 / 0 ATCSLD4 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) AT2G33100 1312 / 0 ATCSLD1 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) AT1G02730 1298 / 0 SOS6, ATCSLD5 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) AT1G32180 1239 / 0 ATCSLD6 CELLULOSE SYNTHASE LIKE D6, cellulose synthase-like D6 (.1) AT5G05170 824 / 0 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT2G25540 823 / 0 CESA10 cellulose synthase 10 (.1) AT4G18780 814 / 0 LEW2, IRX1, ATCESA8, CESA8 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) AT5G17420 812 / 0 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009248 [exp] 1592 / 0 AT3G03050 1929 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10026609 [exp] 1407 / 0 AT3G03050 1326 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10038008 [exp] 1404 / 0 AT3G03050 1818 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10013851 [exp] 1352 / 0 AT4G38190 1876 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10002134 [exp] 1347 / 0 AT3G03050 1473 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10022982 [exp] 1337 / 0 AT4G38190 1823 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10030455 [exp] 1337 / 0 AT3G03050 1258 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10026568 [exp] 1317 / 0 AT4G38190 1868 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10010024 [exp] 1308 / 0 AT1G02730 1806 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G049700 [exp] 1577 / 0 AT3G03050 2020 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.013G082200 [exp] 1559 / 0 AT3G03050 1987 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.001G136200 [exp] 1420 / 0 AT3G03050 1640 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.003G097100 [exp] 1400 / 0 AT3G03050 1610 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.009G170000 [exp] 1371 / 0 AT4G38190 1873 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.004G208800 [exp] 1353 / 0 AT4G38190 1835 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.014G125100 [exp] 1298 / 0 AT1G02730 1820 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Potri.002G200300 [exp] 1286 / 0 AT1G02730 1813 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Potri.003G177800 [exp] 1276 / 0 AT2G33100 1569 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) Potri.001G050200 [exp] 1253 / 0 AT2G33100 1576 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03552 [flax] [poplar] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Lus10030453 pacid=23140699 polypeptide=Lus10030453 locus=Lus10030453.g ID=Lus10030453.BGIv1.0 annot-version=v1.0 ATGAATTACCTACTTAAACTTTCTATTATGTGGTTCAGGCTTCTTGTGGTTATTCGAATTGTTGCTCTCGGCTTCTTTTTGTCATGGAGGGTGCAGAATC CAAACAAGGATGCAATGTGGCTATGGGGCTTGTCAGTTGTTTGCGAGCTTTGGTTTGCTTTCTCTTGGCTTCTTGACCAGCTTCCGAAGCTGTGCCCAAT TAACCGTGCAACTGATCTGAATGTCTTGAAGGAGAAATTCGAAACACCCTCACCCCTGAACCCAACTGGAAAATCTGATCTTCCAGGCATTGATATATTT GTCTCCACTGCTGATCCTGAGAAAGAACCACCTCTCGTCACGGCAAACACCATCCTGTCAATCTTAGCAGCGGACTACCCTTGTGAAAAGCTTGCTTGTT ATGTTTCGGATGATGGTGGTGCACTTCTGACCTTTGAGGCCATGGCTGAAGCTGCAAGTTTTGCTAACATTTGGGTCCCGTTCTGCCGTAAACATGACAT AGAGCCTAGGAACCCGGAGTCTTATTTCAGTCTAAAGAGGGATCCTTACAAGAACAAAGTAAGAGCAGACTTTGTGAAGGATCGCAGGCGAATCAAACGG GAGTACGACGAGTTCAAGGTCCGGATTAACGGTTTGCCTGATTCCATTCGTCGTCGTTCTGATGCGTACCACGCAAGGGAAGAAATCAAAGCCTTGAAGC TTCAGAGGCAGAACAGAGAAGATGAAGCTGTTGAAGGTGTCAAGATACCTAAGGCTACATGGATGGCTGACGGTACGCACTGGCCTGGAACTTGGATTGT TCCTGGACCTGAGCACTCCAAAGGAGACCATGCTGGCATTATACAGGTGATGCTGAAACCTCCTAGCGACGAACCACTACTGGGCGGGAGCAGCGACGAA ACGAAGATCCTAGACTTCACAGAAGTCGACATTCGTCTGCCACTTCTTGTCTACGTATCCCGCGAAAAGCGCCCTGGATACGATCACAACAAGAAGGCAG GAGCCATGAACGCTCTTGTCCGAGCCTCAGCGATCATGTCCAACGGTCCGTTCATCCTCAATCTCGACTGTGATCACTACATCTACAACTCTCAAGCTAT GAGGGAAGGAATGTGTTTCATGATGGACCGAGGTGGCGACCGCCTTTGCTACGTCCAGTTCCCCCAGAGGTTCGAAGGCATCGACCCTTCAGACCGATAC GCCAACCACAACACCGTCTTCTTCGACGTCAACATGCGCGCTCTCGACGGGCTCATGGGTCCGGTCTATGTCGGAACCGGATGCCTGTTCCGAAGAATCG CATTGTATGGGTTCGACCCTCCTCGAGCGAAAGATGACCACCCCGGGTGCTGCAGCTGTTGCTTCAAGAGGAAGAAATCTTCATCCTCAGTCTCGAACTC CCCCGAAGAGGACAACAACTCGTTCCGAATGGGAGACTCAGACGACGACGAAATGAACATGTCACTTCTACCTAAGAGATTCGGAAACTCAACCTTCCTA ATCGACTCGATCCCGGTGGCCGAATTTCAAGGGCGTCCACTTGCAGATCACCCAGCTGTAAAGAATGGTCGTCGACCTGGTGCCCTTACCATTCCCCGTG AACTCCTGGATGCAACCACTGTTGCAGAGGCAATCAATGTCATATCCTGCTGGTACGAGGATAAAACTGAATGGGGTCAACGAACTGGTTGGATCTACGG GTCAGTGACCGAAGACGTCGTAACCGGTTACAGAATGCACAACAGGGGATGGAAATCAGTCTACTGCGTCACAAAACGAGATGCCTTCCGTGGCACAGCA CCCATAAACTTGACGGACAGGCTTCACCAGGTGCTCCGTTGGGCTACCGGATCGGTCGAAATCTTCTTCTCACGGAACAACGCACTCTTAGCCAGCTCGA GAATGAAGTTCCTGCAGCGTATAGCGTACCTCAACGTCGGAATCTACCCGTTCACCTCGGTCTTCCTCATCGTCTACTGCTTCCTCCCCGCACTCTCTTT ATTCTCGGGGCAGTTCATCGTGTCGAGCCTCAACGTGACGTTCCTTGTGTACCTTCTTATCATCACCATCACGCTATGCATGCTGGCGGTTCTCGAAATC AAATGGTCGGGAATCGAGCTCGAAGAATGGTGGAGGAACGAACAGTTCTGGCTAATCGGCGGCACCAGCGCCCACTTAGCAGCAGTCATCCAAGGTCTCC TCAAGGTGGTGGCTGGTATCGAAATCTCCTTCACCCTCACTTCAAAATCAGGAGGAGACGACGTGGACGACGAGTTTGCTGATCTCTACATAGTGAAGTG GACGTCGCTGATGATCCCGCCGATCGTGATCATGATGGTGAACTTGATCGGGATCGCTGTCGGAGTTAGCAGGACGATTTACAGCGTGATACCGCAGTGG AGTAGGCTTTTGGGTGGGGTGTTCTTCAGTTTCTGGGTTTTAGCTCATCTCTACCCGTTTGCTAAGGGGCTCATGGGGAGGCGGGGGAGGACTCCGACGA TCGTGTTTGTGTGGTCGGGGCTCATTGCTATTACGATCTCGTTGCTGTGGGTCGCGATCAATCCTCCGTCGACTACCAACCAGATCGGGGGATCGTTTCA GTTCCCTTGA
AA sequence Show only first row Show all	>Lus10030453 pacid=23140699 polypeptide=Lus10030453 locus=Lus10030453.g ID=Lus10030453.BGIv1.0 annot-version=v1.0 MNYLLKLSIMWFRLLVVIRIVALGFFLSWRVQNPNKDAMWLWGLSVVCELWFAFSWLLDQLPKLCPINRATDLNVLKEKFETPSPLNPTGKSDLPGIDIF VSTADPEKEPPLVTANTILSILAADYPCEKLACYVSDDGGALLTFEAMAEAASFANIWVPFCRKHDIEPRNPESYFSLKRDPYKNKVRADFVKDRRRIKR EYDEFKVRINGLPDSIRRRSDAYHAREEIKALKLQRQNREDEAVEGVKIPKATWMADGTHWPGTWIVPGPEHSKGDHAGIIQVMLKPPSDEPLLGGSSDE TKILDFTEVDIRLPLLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQAMREGMCFMMDRGGDRLCYVQFPQRFEGIDPSDRY ANHNTVFFDVNMRALDGLMGPVYVGTGCLFRRIALYGFDPPRAKDDHPGCCSCCFKRKKSSSSVSNSPEEDNNSFRMGDSDDDEMNMSLLPKRFGNSTFL IDSIPVAEFQGRPLADHPAVKNGRRPGALTIPRELLDATTVAEAINVISCWYEDKTEWGQRTGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTA PINLTDRLHQVLRWATGSVEIFFSRNNALLASSRMKFLQRIAYLNVGIYPFTSVFLIVYCFLPALSLFSGQFIVSSLNVTFLVYLLIITITLCMLAVLEI KWSGIELEEWWRNEQFWLIGGTSAHLAAVIQGLLKVVAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPIVIMMVNLIGIAVGVSRTIYSVIPQW SRLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPSTTNQIGGSFQFP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10030453 [exp]	0	1
AT3G55420			unknown protein		Lus10040295 [exp]	2.0	0.8784
AT4G04740		CPK23, ATCPK23	calcium-dependent protein kina...		Lus10006776 [exp]	2.2	0.8790
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10030454 [exp]	2.8	0.8662
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10031944 [exp]	4.5	0.8623
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10042439 [exp]	6.0	0.8455
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10003253 [exp]	6.1	0.8313
AT5G23100			Protein of unknown function, D...		Lus10009615 [exp]	9.5	0.8696
AT5G51990	AP2_ERF	CBF4, DREB1D	DEHYDRATION-RESPONSIVE ELEMENT...		Lus10031657 [exp]	11.1	0.8339
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10006777 [exp]	14.1	0.8512
AT3G51120			DNA binding;zinc ion binding;n...		Lus10014272 [exp]	22.0	0.8384

Compare expression of checked genes

Lus10030453 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.