Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03050 360 / 1e-116 RHD7, ATCSLD3, KJK, CSLD3 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) AT5G16910 352 / 9e-114 ATCSLD2 cellulose-synthase like D2 (.1) AT4G38190 278 / 4e-86 ATCSLD4 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) AT1G02730 174 / 4e-49 SOS6, ATCSLD5 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) AT2G33100 78 / 4e-16 ATCSLD1 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026610 [exp] 456 / 5e-154 AT3G03050 1028 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10026609 [exp] 436 / 1e-146 AT3G03050 1326 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10038008 [exp] 403 / 2e-133 AT3G03050 1818 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10030455 [exp] 363 / 3e-119 AT3G03050 1258 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10009248 [exp] 320 / 1e-101 AT3G03050 1929 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10013851 [exp] 280 / 6e-87 AT4G38190 1876 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10026568 [exp] 280 / 7e-87 AT4G38190 1868 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10022982 [exp] 250 / 6e-76 AT4G38190 1823 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10001619 [exp] 248 / 1e-75 AT4G38190 961 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G082200 [exp] 440 / 4e-147 AT3G03050 1987 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.019G049700 [exp] 425 / 3e-141 AT3G03050 2020 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.009G170000 [exp] 281 / 2e-87 AT4G38190 1873 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.004G208800 [exp] 273 / 2e-84 AT4G38190 1835 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.003G097100 [exp] 224 / 9e-67 AT3G03050 1610 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.001G136200 [exp] 214 / 4e-63 AT3G03050 1640 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.014G125100 [exp] 181 / 1e-51 AT1G02730 1820 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Potri.002G200300 [exp] 168 / 3e-47 AT1G02730 1813 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Potri.003G177800 [exp] 77 / 6e-16 AT2G33100 1569 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) Potri.001G050200 [exp] 75 / 6e-15 AT2G33100 1576 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030454 pacid=23140614 polypeptide=Lus10030454 locus=Lus10030454.g ID=Lus10030454.BGIv1.0 annot-version=v1.0 ATGGCTTCAAAGTCGTTCAAAGCCAGTAGATCAAACACGTCGATGAGCTCCGACGCGGCGGACGCGCAGCAGCAGCAGCAGCGGGGGACAGTCCCCCCGA CGGTGACGTTCGGCCGGAGGACATCTTCGGGGAGGTACGTGAGCTACTCGAGGGAGGATCTAGACAGTGAGATAGGTAGCAGCGACTTCATGAACTACAC AGTCCACATCCCGCCGACTCCGGACAACCAGCCGATGGATCCTTCGATTTCTCAGAAGGTCGAGGAGCAGTATGTTTCGAACTCGCTCTTCACTGGCGGG TTCAACAGTGTGACTCGAGCTCACTTGATGGATAAGGTTATTGAGTCGGAGGCGAATCATCCTCAGATGGCTGGTTCTAAGGGGTCTTGCTGTGCGATCC CTGGATGTGATGCTAACGTGATGAGTGACGGGCGTGGATTGGATATTCTGCCATGTGAGTGTGATTTTAAGATTTGTAGGGATTGTTATATTGATGCTGT GAAGACTGGGGGTGGAATCTGTCCCGGGTGTAAGGAGAGTTATAAGAACACTGATCTTGATGAGGTTGCTGTTGATAAGTCGAGTCCTCTTCCTCTGCCT GCTCCTGGTGGTGGTACTATGTCGAAGATGGAGAGGCGGCTTTCGTTGATGAAGTCTACGAAGTCTGTTCTTATGAGGAGTCATACTGGTGAATTTGATC ACAATAGGTGGTTGTTTGAGACTAAGGGGACTTATGGTTATGGTAATGCCATTTGGACGAATGATGGTGGGTTTGGTGATGGTAAGGGTATTACATTTCC ATGA
AA sequence Show only first row Show all	>Lus10030454 pacid=23140614 polypeptide=Lus10030454 locus=Lus10030454.g ID=Lus10030454.BGIv1.0 annot-version=v1.0 MASKSFKASRSNTSMSSDAADAQQQQQRGTVPPTVTFGRRTSSGRYVSYSREDLDSEIGSSDFMNYTVHIPPTPDNQPMDPSISQKVEEQYVSNSLFTGG FNSVTRAHLMDKVIESEANHPQMAGSKGSCCAIPGCDANVMSDGRGLDILPCECDFKICRDCYIDAVKTGGGICPGCKESYKNTDLDEVAVDKSSPLPLP APGGGTMSKMERRLSLMKSTKSVLMRSHTGEFDHNRWLFETKGTYGYGNAIWTNDGGFGDGKGITFP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10030454 [exp]	0	1
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10042439 [exp]	2.4	0.8482
AT4G04740		CPK23, ATCPK23	calcium-dependent protein kina...		Lus10006776 [exp]	2.4	0.8726
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10030453 [exp]	2.8	0.8662
AT5G60690	HD	IFL1, REV	REVOLUTA, INTERFASCICULAR FIBE...		Lus10000719 [exp]	4.0	0.8450
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10019986 [exp]	7.5	0.8053
AT5G03680	Trihelix	PTL	PETAL LOSS, Duplicated homeodo...		Lus10014375 [exp]	9.5	0.7986
AT5G58430		ATEXO70B1	exocyst subunit exo70 family p...		Lus10011859 [exp]	10.0	0.7495
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10037720 [exp]	11.2	0.7714
AT5G60690	HD	IFL1, REV	REVOLUTA, INTERFASCICULAR FIBE...		Lus10021470 [exp]	11.6	0.8302
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10019985 [exp]	13.0	0.7695

Compare expression of checked genes

Lus10030454 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.