Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03050 1233 / 0 RHD7, ATCSLD3, KJK, CSLD3 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) AT5G16910 1220 / 0 ATCSLD2 cellulose-synthase like D2 (.1) AT4G38190 1053 / 0 ATCSLD4 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) AT2G33100 1013 / 0 ATCSLD1 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) AT1G02730 1002 / 0 SOS6, ATCSLD5 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) AT1G32180 940 / 0 ATCSLD6 CELLULOSE SYNTHASE LIKE D6, cellulose synthase-like D6 (.1) AT5G05170 625 / 0 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT2G25540 618 / 0 CESA10 cellulose synthase 10 (.1) AT5G17420 616 / 0 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT4G32410 612 / 0 AtCESA1, RSW1, CESA1 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026609 [exp] 1746 / 0 AT3G03050 1326 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10030453 [exp] 1335 / 0 AT3G03050 1584 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10009248 [exp] 1258 / 0 AT3G03050 1929 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10026610 [exp] 1099 / 0 AT3G03050 1028 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10038008 [exp] 1067 / 0 AT3G03050 1818 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10013851 [exp] 1055 / 0 AT4G38190 1876 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10022982 [exp] 1038 / 0 AT4G38190 1823 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10002134 [exp] 1022 / 0 AT3G03050 1473 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10026568 [exp] 1019 / 0 AT4G38190 1868 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G082200 [exp] 1258 / 0 AT3G03050 1987 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.019G049700 [exp] 1253 / 0 AT3G03050 2020 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.001G136200 [exp] 1099 / 0 AT3G03050 1640 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.003G097100 [exp] 1080 / 0 AT3G03050 1610 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.009G170000 [exp] 1075 / 0 AT4G38190 1873 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.004G208800 [exp] 1070 / 0 AT4G38190 1835 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.014G125100 [exp] 1001 / 0 AT1G02730 1820 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Potri.002G200300 [exp] 994 / 0 AT1G02730 1813 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Potri.003G177800 [exp] 983 / 0 AT2G33100 1569 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) Potri.001G050200 [exp] 961 / 0 AT2G33100 1576 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03552 [flax] [poplar] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Lus10030455 pacid=23140547 polypeptide=Lus10030455 locus=Lus10030455.g ID=Lus10030455.BGIv1.0 annot-version=v1.0 ATGAACTATACAGTTCACATCCCGCCGACTCCGGACAACCAGCCGATGGATCCTTCGATTTCTCAGAAGGTGGAGGAGCAGTATGTTTCGAACTCGCTAT TCACGGGAGGGTTCAACAGTGTGACTCGAGCTCATTTGATGGATAAGGTTATTGAGTCTGAAGCGAATCATCCTCAGATGGCTGGTTCTAAGGGGTCTGG GTGTGCGATTCCTGGGTGTGATGCGAATGTGATGAGTGACGAGCGGGGATTGGATATTCTGCCGTGTGAGTGTGATTTTAAGATCTGTAGGGATTGTTAT ATTGATGCTGTGAAGACTGGGGGAGGAATCTGTCCCGGGTGTAAGGAGAGTTATAAGAACACTGATCTTGATGAGGTTGCTGTTGATAAGTCGAGTCCTC TTCCTCTGCCTCCTCCTGGTGGTGGTGGTAGTGGTACTATGTCGAAGATGGAGAGGCGGCTTTCGTTGATGAAGTCGACGAAGTCTGTTCTTATGAGGAG TCAGACTAGTGAATTTGATCACAATAGGTGGCTGTTTGAGACTAGGGGGACTTATGGTTATGGTAATGCTATTTGGACGAATGATGGTGGGTTTGGTGAT GGGAAAGGAGATGATGATGTTGGTGATCGTAAAGATTTGATGACCAAACCGTGGCGGCCTCTCACCAGGGAATTGAAGATTCCCGCTGCGGCCTCTCACC AGGAAATTGAAGATTCCTGCTGCTGTCATCAGCCCGTACAGGCAAGTCTGATCTTCCGGGGATTGACATATTTGTCTCGACTGCCGATCCTGAGAAAGAA CCACCTCTTGTCACTGCAAACACACTCTGTGAAGGCTCGGAGGCGAATCAAACGGGAGTACGACGAGTTCGAGGTCCGGATTAACGGTTTGCCTGATTCC ATTCGTCGTCGTTCTGATGCATATCATGCAAGGGAAGAAATCAAAGCCTTGAAGCTTCAGAGGCAGAACAGGGAAGATGAAGCTGTTGAAGGTGTCAAGA TCCCTAAGGCTACATGGATGGCTGATGGTACTCACTGGCCTGGAACTTGGATGGTTCCTGGACCTGAGCACTCCAAAGGAGACCATGCTGGCATTATTCA GGTGATGCTGAAACCTCCCAGCGATGAACAACTACTCGGTGGGAGCAGTGATGAAACTAAGATCTTAGACTTCAGTGAAGTTGATATTCGTCTGCCACTC CTTGTTTACGTTTCTCGTGAGAAGCGTCCCGGATATGATCATAACAAGAAGGCAGGGGCTATGAACGCTCTTGTTCGTGCCTCAGCTATCATGTCTAATG GTCCTTTCATCCTCAATCTCGACTGTGACCACTACATTTACAACTCTCAGGCAATGAGGGAAGGAATGTGCTTTATGATGGACCGAGGTGGCGACCGCCT TTGTTACGTTCAGTTCCCTCAGAGGTTCGAAGGCATCGACCCTTCTGACAGATATGCCAACCACAACACCGTTTTCTTTGATGTCAACATGCGTGCTCTC GATGGACTTATGGGACCTGTGTATGTGGGAACCGGGTGTCTTTTCAGAAGGATTGCTTTGTATGGATTCGATCCTCCTCGTGCGAAAGAGGACCATCCAG GCTGCTGCAGCTGTTGTTTCTCCAGCCGCAAGAAGAAATCCGCTGTTTCACACACTCCGGAAGAGAACAGGTCGTTAAGGATGGGGGATTCTGATGACGA AGAGATGAACATGTCACTGCTGCCTAAGAGGTTTGGTAACTCAACCTTCCTAATCGACTCAATCCCGGTGGCCGAATTTCAAGGTCGTCCACTTGCAGAT CACCCAGCTGTGAAGAATGGTCGTCGACCTGGTGCTCTTACCATTCCCCGTGAACTCCTGGATGCAACCACTGTTGCAGAGGCAATCAATGTCATATCCT GCTGGTACGAGGACAAGACTGAATGGGGTCAACGAACCGGTTGGATCTACGGGTCAGTGACCGAGGACGTCGTAACCGGTTACAGAATGCATAACAGAGG ATGGAAATCAGTCTACTGCGTCACGAAACGTGATGCCTTCCGTGGCACGGCACCCATAAACTTGACGGACAGGCTTCACCAAGTGCTCCGTTGGGCAACG GGATCGGTCGAAATCTTTTTCTCTCGAAACAATGCTCTCTTAGCCAGTTCAAGGATGAAGTTTCTCCAACGTATAGCTTACCTCAATGTCGGCATATACC CCTTTACATCAGTTTTCCTCATCGTCTACTGCTTCCTCCCGGCACTCTCCTTGTTCTCCGGTCAATTCATTGTGTCGAGTCTCAACGTGACATTCCTTGT CTACCTCCTCATCATCACAATCACCCTATGCATGCTGGCAATTCTTGAAATCAAATGGTCAGGAATCGAGCTGGAAGAATGGTGGAGGAACGAGCAGTTC TGGCTTATCGGAGGCACCAGCGCTCACCTTGCAGCAGTCATCCAAGGTCTGCTCAAGGTTGTGGCTGGTATCGAAATCTCCTTCACTCTCACTTCGAAAT CAGGAGGAGACGATGTGGACGACGAGTTTGCTGATCTCTACATAGTGAAGTGGACTTCGCTCATGATCCCGCCAATCGTGATCATGATGGTGAACTTGAT CGGGATCGCTGTCGGGGTTAGCAGGACGATCTACAGCGTGATACCGCAATGGAGTAGGCTTCTGGGAGGCGTGTTCTTCAGTTTCTGGGTGCTGGCTCAT CTCTACCCATTTGCCAAGGGGCTCATGGGAAGGAGAGGAAGAACTCCTACTATAGTCTTTGTGTGGTCTGGACTTGTTGCCATTACCATTTCTTTGCTGT GGGTTGCTATCAATCCTCCTTCTACCACTAACCAAATCGGGGGATCGTTCCAGTTCCCTTGA
AA sequence Show only first row Show all	>Lus10030455 pacid=23140547 polypeptide=Lus10030455 locus=Lus10030455.g ID=Lus10030455.BGIv1.0 annot-version=v1.0 MNYTVHIPPTPDNQPMDPSISQKVEEQYVSNSLFTGGFNSVTRAHLMDKVIESEANHPQMAGSKGSGCAIPGCDANVMSDERGLDILPCECDFKICRDCY IDAVKTGGGICPGCKESYKNTDLDEVAVDKSSPLPLPPPGGGGSGTMSKMERRLSLMKSTKSVLMRSQTSEFDHNRWLFETRGTYGYGNAIWTNDGGFGD GKGDDDVGDRKDLMTKPWRPLTRELKIPAAASHQEIEDSCCCHQPVQASLIFRGLTYLSRLPILRKNHLLSLQTHSVKARRRIKREYDEFEVRINGLPDS IRRRSDAYHAREEIKALKLQRQNREDEAVEGVKIPKATWMADGTHWPGTWMVPGPEHSKGDHAGIIQVMLKPPSDEQLLGGSSDETKILDFSEVDIRLPL LVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQAMREGMCFMMDRGGDRLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRAL DGLMGPVYVGTGCLFRRIALYGFDPPRAKEDHPGCCSCCFSSRKKKSAVSHTPEENRSLRMGDSDDEEMNMSLLPKRFGNSTFLIDSIPVAEFQGRPLAD HPAVKNGRRPGALTIPRELLDATTVAEAINVISCWYEDKTEWGQRTGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWAT GSVEIFFSRNNALLASSRMKFLQRIAYLNVGIYPFTSVFLIVYCFLPALSLFSGQFIVSSLNVTFLVYLLIITITLCMLAILEIKWSGIELEEWWRNEQF WLIGGTSAHLAAVIQGLLKVVAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPIVIMMVNLIGIAVGVSRTIYSVIPQWSRLLGGVFFSFWVLAH LYPFAKGLMGRRGRTPTIVFVWSGLVAITISLLWVAINPPSTTNQIGGSFQFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10030455 [exp]	0	1
AT5G11520		YLS4, ASP3	YELLOW-LEAF-SPECIFIC GENE 4, a...		Lus10011101 [exp]	2.4	0.9206
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Lus10017165 [exp]	3.0	0.9224
AT3G57450			unknown protein		Lus10018070 [exp]	7.5	0.8559
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10020310 [exp]	9.2	0.9120
AT5G08570			Pyruvate kinase family protein...		Lus10013450 [exp]	9.6	0.9138
AT1G67100	AS2	LBD40	LOB domain-containing protein ...		Lus10028470 [exp]	11.6	0.8988
AT5G39890			Protein of unknown function (D...		Lus10015360 [exp]	13.2	0.9160
AT3G53390			Transducin/WD40 repeat-like su...		Lus10019930 [exp]	16.5	0.8970
AT3G05580		TOPP9	type one protein phosphatase 9...		Lus10020659 [exp]	16.9	0.8709
AT5G24400		PGL3, EMB2024	6-PHOSPHOGLUCONOLACTONASE 3, E...		Lus10022352 [exp]	17.1	0.8991

Compare expression of checked genes

Lus10030455 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.