Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14185 634 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14190 627 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G72970 387 / 1e-127 HTH, EDA17 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT1G12570 383 / 1e-126 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G73050 380 / 8e-126 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT3G56060 376 / 7e-124 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT5G51950 372 / 1e-122 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT5G51930 349 / 3e-113 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030459 [exp] 754 / 0 AT1G14185 605 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10032641 [exp] 734 / 0 AT1G14185 608 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030461 [exp] 720 / 0 AT1G14185 596 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10026607 [exp] 711 / 0 AT1G14185 605 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10026606 [exp] 694 / 0 AT1G14190 554 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030457 [exp] 679 / 0 AT1G14185 589 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030462 [exp] 676 / 0 AT1G14185 567 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10012816 [exp] 669 / 0 AT1G14190 539 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030460 [exp] 667 / 0 AT1G14185 555 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G168100 [exp] 754 / 0 AT1G14185 654 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.008G087400 [exp] 688 / 0 AT1G14185 639 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G168200 [exp] 680 / 0 AT1G14190 598 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.001G111500 [exp] 402 / 8e-134 AT1G12570 773 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.003G039000 [exp] 390 / 7e-129 AT1G72970 808 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.008G009600 [exp] 387 / 2e-128 AT1G73050 785 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.001G200800 [exp] 386 / 2e-127 AT1G72970 831 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.012G135200 [exp] 278 / 2e-87 AT5G51950 525 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.010G249501 [exp] 61 / 5e-11 AT1G73050 164 / 7e-49 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05199 [flax] [poplar] GMC_oxred_C GMC oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00732 [flax] [poplar] GMC_oxred_N GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10030456 pacid=23140740 polypeptide=Lus10030456 locus=Lus10030456.g ID=Lus10030456.BGIv1.0 annot-version=v1.0 ATGGAGCTTCAACCTTTTGTTTATGGTTACAGTCTACTTGCAGCTTTTATCCTGTTGCTGTTTCGCTCGTGTCATTCGTTTCCCGAACCTCAAGGTAATT TACATCTCACAATGGTTTGTAGCTTGTCGATACCTGAAATAACTCATGACCTCGAAATGATCGGTTCGATTCCTTTTCTAAACCACCCTTTTTCTGCAGG AACAAATCTTCCTTATGTGACTTCAAACATCAGTGATATAGCAGGAAAGTCCTTTGACTACATCATAGTAGGTGGAGGAACAGCCGGCTGCCCTCTGGCC GCAACACTCTCCGAGAAATTCTCCGTTCTACTAATTGAACGCGGTGGCTTGCCATATGGGAACCCATGGATAACAGACAAGCTCTTCTACGGCTTCTCAT TGCTCCAGACCGACGAATTATCATCCGTGTCTCAGTCATTCACCACCACAGAAGGAGTAGCGTGCCACAGAGGAAGAGTCCTTGGAGGTTCGACAGCCAT AAACGGAGGGTTCTACAGTCGAGCCAGCGACAATTTCGTCAGGACGGCGGGATGGGATGAGGAGCTAGTGAAGGAATCTTATGAATGGGTGGAATCAAGG ATTGTTAGTATACCTGAGCTGACAATGTGGCAAGCTATTGTGGAATTCGGGCTTCTTGAAGCTGGAGTCCTTCCGTATAATGGGTTCACCTGGGAGCACG TTGAAGGAACGAAGATCGGTGGGTCTATTTTTGATCCGTGGGGGAAGAGACATACCTCTGCTGATCTTCTCCAAGCTGGGAGACCTGAAAACATCACGGT TCTCTTGAATGCAACTGTCAAGAGTGTCATATTCCATAAGTGTGGAGAATCAAACAAAACAATTGCTCGCGGTATTCAGTTCGTAAGCAGCAACGACGAC CAGCTCGAGACGTATGAAGCTTACCTCAACCGGCCAGAGAACTCGAGTTCTCCTCCAGGAGACGTAATACTATCAGCAGGGACATTAGGCAGCCCGCAGA TCCTCCTACTGAGCGGCATCGGACCAGCAACCCATCTCAACAAGCTCAATATCTCACTCGTCCTCGATCTAAAACCGGTCGGCCAGGAAATGAAAGACAA CCCGGGAATCGCAGTCCTGGTCGACTCCAAACCCGAACACCGGTCCCCAGACACACCACAGGTAGCCGGCATAACAAAAGGACTCAACTTTATAATCGAG AGCGGAATCCTACCGGTCACATTCAACACCACAAGGATCCCCATAGCGATCAAGCTAGCATTCCCCGAATCCAAAGGCGAACTACAACTCAACTCGACCG ATCCCAGGGCGAACCCCGTGGTCTCGTTTAACTACTTGGCGACAGAGAAAGACATGGACCAATGTGTGGAGATGGCTCGGTTGCTTAAGACGGTCGCCAA GTCTCGACCGGTCGAGATGTACCTGGGCAATGTACCTCAGGATAGCTTGATGTCGGGTGGTCCCGACGAGCTCCGGACTTTCTGCAGGAGGAATGTTAGG ACTTACTATCATTACCACGGTGGTTGTGGAGTTGGATCAGTTGTCGATAAGGATTATAGAGTGGTTGGTGTTGAAGGTTTGAGAGTCGTCGATGGGTCGA CGTTCTTGGAGTCGCCCGGGACGAATCCAATGGCTACGGTTTTGATGCTCGGTAGATATCAGGGGATCAAGATTCTTGGCGAGTGGGAGAGTCAAACTCA GCAACATCATCGGTAA
AA sequence Show only first row Show all	>Lus10030456 pacid=23140740 polypeptide=Lus10030456 locus=Lus10030456.g ID=Lus10030456.BGIv1.0 annot-version=v1.0 MELQPFVYGYSLLAAFILLLFRSCHSFPEPQGNLHLTMVCSLSIPEITHDLEMIGSIPFLNHPFSAGTNLPYVTSNISDIAGKSFDYIIVGGGTAGCPLA ATLSEKFSVLLIERGGLPYGNPWITDKLFYGFSLLQTDELSSVSQSFTTTEGVACHRGRVLGGSTAINGGFYSRASDNFVRTAGWDEELVKESYEWVESR IVSIPELTMWQAIVEFGLLEAGVLPYNGFTWEHVEGTKIGGSIFDPWGKRHTSADLLQAGRPENITVLLNATVKSVIFHKCGESNKTIARGIQFVSSNDD QLETYEAYLNRPENSSSPPGDVILSAGTLGSPQILLLSGIGPATHLNKLNISLVLDLKPVGQEMKDNPGIAVLVDSKPEHRSPDTPQVAGITKGLNFIIE SGILPVTFNTTRIPIAIKLAFPESKGELQLNSTDPRANPVVSFNYLATEKDMDQCVEMARLLKTVAKSRPVEMYLGNVPQDSLMSGGPDELRTFCRRNVR TYYHYHGGCGVGSVVDKDYRVVGVEGLRVVDGSTFLESPGTNPMATVLMLGRYQGIKILGEWESQTQQHHR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030456 [exp]	0	1
AT1G10750			Protein of Unknown Function (D...		Lus10013046 [exp]	1.4	0.8278
AT3G50660		PSC1, CYP90B1, ...	SUPPRESSOR OF NPH4 2, SHADE AV...		Lus10041737 [exp]	4.9	0.7690
AT4G35830		ACO1	aconitase 1 (.1.2)		Lus10041858 [exp]	5.5	0.7738
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10019786 [exp]	6.7	0.7705
AT2G24230			Leucine-rich repeat protein ki...		Lus10035826 [exp]	11.3	0.7202
AT4G35830		ACO1	aconitase 1 (.1.2)		Lus10028405 [exp]	12.0	0.7562
AT3G50660		PSC1, CYP90B1, ...	SUPPRESSOR OF NPH4 2, SHADE AV...		Lus10041738 [exp]	15.2	0.7078
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10042004 [exp]	16.5	0.7617
AT5G02440			unknown protein		Lus10016560 [exp]	19.2	0.6927
AT3G20898			unknown protein		Lus10040827 [exp]	19.7	0.7876

Compare expression of checked genes

Lus10030456 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.