Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14190 542 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14185 539 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G72970 346 / 1e-112 HTH, EDA17 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT3G56060 345 / 2e-112 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G73050 343 / 8e-112 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G12570 343 / 1e-111 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT5G51950 330 / 8e-107 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT5G51930 289 / 1e-90 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026607 [exp] 847 / 0 AT1G14185 605 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030459 [exp] 673 / 0 AT1G14185 605 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10026606 [exp] 670 / 0 AT1G14190 554 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030461 [exp] 656 / 0 AT1G14185 596 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10012816 [exp] 655 / 0 AT1G14190 539 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030460 [exp] 651 / 0 AT1G14185 555 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10032641 [exp] 641 / 0 AT1G14185 608 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030456 [exp] 627 / 0 AT1G14185 634 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10012817 [exp] 623 / 0 AT1G14185 545 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G168100 [exp] 601 / 0 AT1G14185 654 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G168200 [exp] 592 / 0 AT1G14190 598 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.008G087400 [exp] 566 / 0 AT1G14185 639 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.001G111500 [exp] 357 / 3e-117 AT1G12570 773 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.003G039000 [exp] 352 / 5e-115 AT1G72970 808 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.008G009600 [exp] 345 / 2e-112 AT1G73050 785 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.001G200800 [exp] 341 / 1e-110 AT1G72970 831 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.012G135200 [exp] 244 / 4e-75 AT5G51950 525 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.010G249501 [exp] 61 / 4e-11 AT1G73050 164 / 7e-49 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05199 [flax] [poplar] GMC_oxred_C GMC oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00732 [flax] [poplar] GMC_oxred_N GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10030457 pacid=23140790 polypeptide=Lus10030457 locus=Lus10030457.g ID=Lus10030457.BGIv1.0 annot-version=v1.0 ATGATGTTACCCCTGAAGGTTTTTGTCTATGGTGATCACAGGCTTCTTGCAGCTTTCCCCCTACTGCTCCTCCTTCTGCTTCATTCATCTCATTCTTCTT CCGGAACGGTTCCTTATATGACATCAGACATGAGCGAGATATCCAGAAAGTCCTTCGACTACATAATAGTAGGCGGAGGGGCGGCAGGCTGTCCTCTGGC AGCCACCCTTTCGGATAAATTCTCTGTTCTGCTAATCGAAAGAGGTGGGTCACCGTATGGCGACCCACGGGTAACGGAAAAGCGCCGCTACGGGTTGTCG TTACTCCAGACGGACGAATTCTCGTCCCTGGCCCAGTCGTTCACTTCCGAGGAAGGAGTCGTGAACCGGAGAGGAAGGGTACTCGGAGGATCCACGGCCA TAAATGCGGCGTTCTACAGCCGGGCCAGCAATAAATTTGTAGCGAAATCGGGCTGGAATGGACGGCTGGTGAAGGAATCTTATGAGTGGGTTGAATCTGA GATTGTCACTAAACCTGAGAAGCTGTCAGGATGGCAAGCTGCTGTCAGGTCAGGATTTCCCGAAGCGGGAATCCTTCCTGACAACGGATTCACATGGGAA CACATTGTAGGGACGAAGATCGGTGGATCTACATTCGATAATCGGGGGCAGAGACACACCTCTGCCGATCTTTTGCGGATGGGAAGGCTCGAGAATATCA TAGGTCTGTTGAATGCTACGGTGAAGAGTGTCATATTCGACAATGGAGAATCAAAAAAACCCATTGCTCGCGGCATCCGATTCATGAGCAGCAACGGTAC CGGAGATCGAACCTATGAAGCTTATCTAACTTCTCCCTTAGGTGATGTGATATTATCAGCAGGGGCATTAGGCAGCCCTCAAATCCTCCTACTAAGCGGC ATCGGACCTAAAACCCATCTAACCCAACTCGGCATCCCACTCATCCTCGAATCGAGCCAAGTGGGACGCGACGTCCAAGACAACCCTGGAATGTCCATCC CGGTCGGTTCAAAACCCGAACGTCGGTTCCCGGACTCACCACAAGTAGCAGGAATAACAAAAGGATTCAGATTCACAATCGAAGCAGGCATAGTGCCTAC ATCCCTCAGCACCACGAGGAACTGGGTATCGATCAAGCTAGCGTTCCCCGAATCCACAGGGAAGCTCGAGCTGAACTCGACCGACCCCAGGAAGAACCCC GTGGTTTCCTACAACTACCTGAAGGCACAAAGAGACATGGCTGGATGTGTCGAGATGGTCAGACTGGCGGACGCGGTCGTCAAGTCTCGACCCGTGACTG TGTTCATGGGTGGGAGTGTAGAGACGAACCTGACATCAAATCCTGATGAGTTGCGGACTTACTGCAGGACGAATGTCAGGACTTACTATCATTACCACGG TGGGTGTGCTCTTGGATCCGTTGTTGACCAGGATTATAGAGTGGTTGGTGTTGATGGTTTGAGAGTCGTCGATGGGTCGACTTTCCTGGAGTCGCCTGGA ACAAATCCGATGGCTACGGTTATGATGCTTGGCAGGTATCAAGGGATCAAGATCCTTGCCGAGAGGATGAAATGA
AA sequence Show only first row Show all	>Lus10030457 pacid=23140790 polypeptide=Lus10030457 locus=Lus10030457.g ID=Lus10030457.BGIv1.0 annot-version=v1.0 MMLPLKVFVYGDHRLLAAFPLLLLLLLHSSHSSSGTVPYMTSDMSEISRKSFDYIIVGGGAAGCPLAATLSDKFSVLLIERGGSPYGDPRVTEKRRYGLS LLQTDEFSSLAQSFTSEEGVVNRRGRVLGGSTAINAAFYSRASNKFVAKSGWNGRLVKESYEWVESEIVTKPEKLSGWQAAVRSGFPEAGILPDNGFTWE HIVGTKIGGSTFDNRGQRHTSADLLRMGRLENIIGLLNATVKSVIFDNGESKKPIARGIRFMSSNGTGDRTYEAYLTSPLGDVILSAGALGSPQILLLSG IGPKTHLTQLGIPLILESSQVGRDVQDNPGMSIPVGSKPERRFPDSPQVAGITKGFRFTIEAGIVPTSLSTTRNWVSIKLAFPESTGKLELNSTDPRKNP VVSYNYLKAQRDMAGCVEMVRLADAVVKSRPVTVFMGGSVETNLTSNPDELRTYCRTNVRTYYHYHGGCALGSVVDQDYRVVGVDGLRVVDGSTFLESPG TNPMATVMMLGRYQGIKILAERMK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030457 [exp]	0	1
AT1G43790		TED6	tracheary element differentiat...		Lus10029760 [exp]	1.0	0.9876
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10008635 [exp]	2.0	0.9793
AT5G02090			unknown protein		Lus10010878 [exp]	2.0	0.9777
AT1G05310			Pectin lyase-like superfamily ...		Lus10010470 [exp]	4.9	0.9754
AT1G23390			Kelch repeat-containing F-box ...		Lus10013033 [exp]	6.3	0.9669
AT1G10460		GLP7	germin-like protein 7 (.1)		Lus10010726 [exp]	6.7	0.9792
AT3G06260		GolS9, GATL4	galactinol synthase 9, galactu...		Lus10034012 [exp]	6.9	0.9732
AT1G20850		XCP2	xylem cysteine peptidase 2 (.1...		Lus10013204 [exp]	9.2	0.9761
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008938 [exp]	9.2	0.9708
AT5G05950		MEE60	maternal effect embryo arrest ...		Lus10016474 [exp]	9.2	0.9748

Compare expression of checked genes

Lus10030457 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.