Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14185 480 / 8e-167 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14190 471 / 4e-163 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G12570 332 / 5e-108 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G72970 332 / 7e-108 HTH, EDA17 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT1G73050 323 / 1e-104 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT3G56060 321 / 1e-103 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT5G51950 300 / 5e-96 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT5G51930 288 / 1e-90 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012817 [exp] 892 / 0 AT1G14185 545 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030460 [exp] 765 / 0 AT1G14185 555 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10026606 [exp] 703 / 0 AT1G14190 554 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10012816 [exp] 689 / 0 AT1G14190 539 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030459 [exp] 650 / 0 AT1G14185 605 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10026607 [exp] 609 / 0 AT1G14185 605 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030457 [exp] 605 / 0 AT1G14185 589 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030461 [exp] 601 / 0 AT1G14185 596 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10032641 [exp] 600 / 0 AT1G14185 608 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G168200 [exp] 559 / 0 AT1G14190 598 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G168100 [exp] 539 / 0 AT1G14185 654 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.008G087400 [exp] 527 / 0 AT1G14185 639 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.001G111500 [exp] 338 / 3e-110 AT1G12570 773 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.008G009600 [exp] 320 / 9e-104 AT1G73050 785 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.001G200800 [exp] 321 / 2e-103 AT1G72970 831 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.003G039000 [exp] 319 / 1e-102 AT1G72970 808 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.012G135200 [exp] 223 / 2e-67 AT5G51950 525 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.010G249501 [exp] 51 / 1e-07 AT1G73050 164 / 7e-49 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05199 [flax] [poplar] GMC_oxred_C GMC oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00732 [flax] [poplar] GMC_oxred_N GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10030458 pacid=23140600 polypeptide=Lus10030458 locus=Lus10030458.g ID=Lus10030458.BGIv1.0 annot-version=v1.0 ATGGACCAGATGAGCATCATCTCTTTGCTGCTGCTGCTGCTGCTTCTTCTTCACTCGTATCGTTCTTCAGCCCAGCTTCGAGCAGCGAAATTCCCTTACA TGACATCAAATGTCGAGGAAGTGGCAGGAAAGTCCTTCGACTACATCGTGGTAGGCGGAGGTGCAGCTGGTTGTCCGCTTGTAGCTACACTCTCGCAAAA TTTCTCTGTGCTACTAATCGAGCGTGGTGGATCGCCGTATGGGAACCCGTGGATAACAGAGAAGCGCTACTTTGGCTTCCCAATGCTCGAAACTGATGAA TTCTCGTCGGTCTCCCAATCATTGATTACAAATGAAGGAGTGAAACTCCACAGAGGAAGAGTCCTAGGAGGATCAACGGCTATAAACGGAGGGCTCTATA GCAGAGCGAGCGGCGAATTTGTCACGAAATCGGGCTGGGATAAACAGTTGGTGAATGAGTCTTATGAATGGGTTGAATCTAAGATCATTACTAAACCTGT TGTGCTGTCGGAGTGGCAATCTTCTGTCAGGTCTGGATTCCTTGCAGCGGGAATCCTTCCGGACAACGGATTCTCTTGGGAACACATCGAGGGAACGAAG ATTAGCGGGACCATATTTGATTCACAGAGAGAAACACAAAATGCCACTGCTCGCGGCATCCAGTTCATAAGCAGCAATGGTACCGGAGATCGTACCTATG AAGCTTACATCAACCAAACAGCAAATTCAACTCGAAGTTCGTCCGGGGACGTGATATTATCAGCAGGGGCATTAAGCAGCCCTCAGATCCTCCTACTGAG CGGGATCGGACCGACACTCCAACTCAACCAACTCAACATCACAGTCGTCCTCGAGTCGAACCACGTGGGGCTCGAAGTGCAAGACAACCCGGCACTTAAC ATCTTGGTCGGTTCGAAAATCGGAGACAAGCTCCCGGACACACCACAAGTTGTAGGAATAACAACAGGATTCAACTCCATCATCCAGGGCTTCATCGTAG CAGTAAGCTCCAACGCTACAGGAAACATGACATTAGTCAAGCTAGCATCACCGGAATCGAGAGGGAAGCTGGAACTGAACTCGACCGATCCCAGGAAGAA CCCTGTAGTGTCGTACAACTACTTAGGGACACAGAAAGACATGGATGGATGTGTGGAGATGGCCAAGGTGGCAATGACTGTCGCCAAGTATCTATCTCCG GAGACGAACGTGGTGTCGAATCCCGACGAGCTGCCTACTTACTGCAGGAACAATGTCGGGACAAACTTTCATTACCATGGTGGTTGTGCTCTTGGATCCG TTGTTGATCAGGATTATAGTGTGCTTGGTGTCAAAGGTTTGAGAGTTGTGGATGGCTCGACGTTCTCCGAATTGCCTGGATCGAACCCCATGGCTACACT TATGATGCTTGGCAGGTATCAAGGTATCAAGATTCTTGCTCAGAGGATGCAATAA
AA sequence Show only first row Show all	>Lus10030458 pacid=23140600 polypeptide=Lus10030458 locus=Lus10030458.g ID=Lus10030458.BGIv1.0 annot-version=v1.0 MDQMSIISLLLLLLLLLHSYRSSAQLRAAKFPYMTSNVEEVAGKSFDYIVVGGGAAGCPLVATLSQNFSVLLIERGGSPYGNPWITEKRYFGFPMLETDE FSSVSQSLITNEGVKLHRGRVLGGSTAINGGLYSRASGEFVTKSGWDKQLVNESYEWVESKIITKPVVLSEWQSSVRSGFLAAGILPDNGFSWEHIEGTK ISGTIFDSQRETQNATARGIQFISSNGTGDRTYEAYINQTANSTRSSSGDVILSAGALSSPQILLLSGIGPTLQLNQLNITVVLESNHVGLEVQDNPALN ILVGSKIGDKLPDTPQVVGITTGFNSIIQGFIVAVSSNATGNMTLVKLASPESRGKLELNSTDPRKNPVVSYNYLGTQKDMDGCVEMAKVAMTVAKYLSP ETNVVSNPDELPTYCRNNVGTNFHYHGGCALGSVVDQDYSVLGVKGLRVVDGSTFSELPGSNPMATLMMLGRYQGIKILAQRMQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030458 [exp]	0	1
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10027896 [exp]	1.0	0.9990
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006693 [exp]	4.7	0.8489
AT5G18460			Protein of Unknown Function (D...		Lus10006861 [exp]	5.7	0.8489
AT5G12060			Plant self-incompatibility pro...		Lus10023085 [exp]	6.6	0.8489
AT2G17030			F-box family protein with a do...		Lus10022619 [exp]	7.4	0.8408
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10035616 [exp]	8.1	0.8381
					Lus10011218 [exp]	8.8	0.8343
AT1G61290		ATSYP124, SYP12...	syntaxin of plants 124 (.1)		Lus10018441 [exp]	9.5	0.7821
AT5G03620			Subtilisin-like serine endopep...		Lus10003254 [exp]	10.4	0.7898
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001037 [exp]	11.0	0.7919

Compare expression of checked genes

Lus10030458 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.