Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14185 604 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14190 595 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G72970 401 / 7e-134 HTH, EDA17 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT1G73050 385 / 2e-128 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G12570 376 / 2e-124 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT3G56060 372 / 9e-123 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT5G51950 367 / 3e-121 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT5G51930 330 / 1e-106 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032641 [exp] 762 / 0 AT1G14185 608 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030460 [exp] 757 / 0 AT1G14185 555 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10026607 [exp] 754 / 0 AT1G14185 605 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10026606 [exp] 754 / 0 AT1G14190 554 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030456 [exp] 754 / 0 AT1G14185 634 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030461 [exp] 733 / 0 AT1G14185 596 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030457 [exp] 729 / 0 AT1G14185 589 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030462 [exp] 724 / 0 AT1G14185 567 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10012816 [exp] 724 / 0 AT1G14190 539 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G168100 [exp] 686 / 0 AT1G14185 654 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G168200 [exp] 675 / 0 AT1G14190 598 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.008G087400 [exp] 653 / 0 AT1G14185 639 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.001G111500 [exp] 391 / 3e-130 AT1G12570 773 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.003G039000 [exp] 386 / 3e-128 AT1G72970 808 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.001G200800 [exp] 380 / 1e-125 AT1G72970 831 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.008G009600 [exp] 378 / 2e-125 AT1G73050 785 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.012G135200 [exp] 288 / 6e-92 AT5G51950 525 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.010G249501 [exp] 62 / 2e-11 AT1G73050 164 / 7e-49 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05199 [flax] [poplar] GMC_oxred_C GMC oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00732 [flax] [poplar] GMC_oxred_N GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10030459 pacid=23140573 polypeptide=Lus10030459 locus=Lus10030459.g ID=Lus10030459.BGIv1.0 annot-version=v1.0 ATGGGGTATGGCAGGCTTCTTGCAGCTCGCATCCTGTTGCTGCTGCTTCTTCACTCATGTCATTCGTCTGGCCAGCCTCAAGGAGCGAAATTTCCTTACG TGACTTCAAATGTCAATGAGGTAGCAGGGAAGTCCTTTGACTACATCGTGGTAGGCGGAGGAGCAGCGGGCTGCCCTCTGGCCGCCACCCTCTCAGAGAA ATTCTCCGTTCTACTAATCGAACGCGGTGGGTCGCCATATGGGAACCCGTGGATAATGAACAAGCGTTTCTACGGCTTCCCATTGCTCCAAACGGACGAG TTATCGTCGGTCTCTCAGTCATTCACTTCCAAGGAAGGAGTAGTTAACCACAGAGGAAGAGTCCTCGGAGGATCAACAGCCTTAAATGCAGGGTTCTACA GTAGAGCTAGCAATGATTTCGTGAGGACAGCGGGTTGGGATGAGGAGCTGGTGAAGGAATCTTATGAATGGGTTGAATCTAAGATCGTTACTAAACCTGA TCAGCTGACAACGTGGCAAGCTGCTGTGAAATCTCAATTTCTTGAAGCAGCTGGAATCCTTCCTTACAACGGATTCACCTGGGAGCACATCAAAGGAACG AAGCTCAGTGGGTCTATCTTCGATTCACAAGGGACGAGACATACCTCTGCTGATCTTCTTCAGATGGGAAGACCAGAGAACATCAAAGTTCTGTTGAATG CTACAGTCAAGAGTGTCATATTCAAAAACAGTGGAGAGGCAAACATGACCATTGCTCGTGGAGTTCGGTTCATCAGCAGCCATGGGGACGAAGATCGAAC CTATGAAGCTTATCTAACTTCTTCAGCAGGCGCGGTGATATTATCAGCAGGGGCATTGGGCAGCCCTCAGATTCTCCTACTAAGCGGCATTGGACCGAAA CCCCATCTCTACCAACTCAACATCCCGGTCGTCCTTGAATCGAACCGTGTGGGACAGGAAGTGAAAGACAACCCGGGAATTTCCATCCTGGTTGGTTCAA AACCCGAATACCAATTCTCAGACACACCACAAGTAGCAGGCATAACAAAAGGATTCAAGTTCATAATCGAGAGCGGTATCGCGCCAATAAGCTTCAACGA AACGGGGAACCGGGTATCGATCAAGCTAGCGTTCCCTGAATCCAAAGGGAAGCTGGAATTAAACTCAACCGATCCCAGGAAGAACCCTGAGGTTTCATAC AACTACCTGGGAACAGAGAAAGACATGGATGGATGTGTTGAGATGGTCAAATTGGCAATGACCGTTGCCAAGTCTCTATCTTTGGAGATGTTCCATGGAA ATGTACCTCTGGATACGAAGGTGGTGTGGAATCCTGATGAGCTGCGGACATTCTGCAGGAAGAATGTGAGGACTTACTATCATTATCACGGCGGGTGCCT TGTTGGATCAGTTGTTGATGAGGATTATAGAGTGGTTGGCGTTAAAGGTTTGAGAGTTGTGGATGGGTCTACATTCTCCGAATCGCCCGGTACGAATCCG ATGGCTACTGTTCTGATGCTTGGTCGATATCAAGGGACCAAGATTCTCGCTGAGAGGGAGAATGATGGTGAGAAACATCAGTGGCGGACTGAACTTTGA
AA sequence Show only first row Show all	>Lus10030459 pacid=23140573 polypeptide=Lus10030459 locus=Lus10030459.g ID=Lus10030459.BGIv1.0 annot-version=v1.0 MGYGRLLAARILLLLLLHSCHSSGQPQGAKFPYVTSNVNEVAGKSFDYIVVGGGAAGCPLAATLSEKFSVLLIERGGSPYGNPWIMNKRFYGFPLLQTDE LSSVSQSFTSKEGVVNHRGRVLGGSTALNAGFYSRASNDFVRTAGWDEELVKESYEWVESKIVTKPDQLTTWQAAVKSQFLEAAGILPYNGFTWEHIKGT KLSGSIFDSQGTRHTSADLLQMGRPENIKVLLNATVKSVIFKNSGEANMTIARGVRFISSHGDEDRTYEAYLTSSAGAVILSAGALGSPQILLLSGIGPK PHLYQLNIPVVLESNRVGQEVKDNPGISILVGSKPEYQFSDTPQVAGITKGFKFIIESGIAPISFNETGNRVSIKLAFPESKGKLELNSTDPRKNPEVSY NYLGTEKDMDGCVEMVKLAMTVAKSLSLEMFHGNVPLDTKVVWNPDELRTFCRKNVRTYYHYHGGCLVGSVVDEDYRVVGVKGLRVVDGSTFSESPGTNP MATVLMLGRYQGTKILAERENDGEKHQWRTEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030459 [exp]	0	1
AT1G49710		ATFUT12, FUCTB,...	fucosyltransferase 12 (.1)		Lus10002401 [exp]	57.6	0.8394
AT3G01490			Protein kinase superfamily pro...		Lus10022227 [exp]	118.6	0.8231
AT1G26340		B5 #6, B5#6, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10036973 [exp]	122.6	0.8176
AT1G54740			Protein of unknown function (D...		Lus10035353 [exp]	131.8	0.8014
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10019531 [exp]	141.6	0.8194
AT4G10490			2-oxoglutarate (2OG) and Fe(II...		Lus10031150 [exp]	177.2	0.8126
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10031885 [exp]	181.0	0.8061
AT5G24080			Protein kinase superfamily pro...		Lus10039315 [exp]	182.7	0.8054
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10031315 [exp]	190.0	0.8105
AT3G13730		CYP90D1	"cytochrome P450, family 90, s...		Lus10006152 [exp]	222.4	0.7974

Compare expression of checked genes

Lus10030459 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.