Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14185 534 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14190 532 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT3G56060 352 / 3e-115 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G12570 347 / 4e-113 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G72970 346 / 1e-112 HTH, EDA17 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT1G73050 342 / 1e-111 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT5G51950 336 / 2e-109 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT5G51930 303 / 3e-96 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026606 [exp] 827 / 0 AT1G14190 554 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10012817 [exp] 795 / 0 AT1G14185 545 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10012816 [exp] 773 / 0 AT1G14190 539 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030458 [exp] 741 / 0 AT1G14185 481 / 5e-167 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030459 [exp] 729 / 0 AT1G14185 605 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10032641 [exp] 702 / 0 AT1G14185 608 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10026607 [exp] 681 / 0 AT1G14185 605 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030461 [exp] 679 / 0 AT1G14185 596 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030457 [exp] 672 / 0 AT1G14185 589 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G168200 [exp] 612 / 0 AT1G14190 598 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G168100 [exp] 604 / 0 AT1G14185 654 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.008G087400 [exp] 577 / 0 AT1G14185 639 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.001G111500 [exp] 346 / 8e-113 AT1G12570 773 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.003G039000 [exp] 345 / 4e-112 AT1G72970 808 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.001G200800 [exp] 343 / 2e-111 AT1G72970 831 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.008G009600 [exp] 339 / 1e-110 AT1G73050 785 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.012G135200 [exp] 259 / 9e-81 AT5G51950 525 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.010G249501 [exp] 57 / 9e-10 AT1G73050 164 / 7e-49 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05199 [flax] [poplar] GMC_oxred_C GMC oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00732 [flax] [poplar] GMC_oxred_N GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10030460 pacid=23140623 polypeptide=Lus10030460 locus=Lus10030460.g ID=Lus10030460.BGIv1.0 annot-version=v1.0 ATGGACCAGATCAGCATCATCTCGTTGTTGTTGTTGCTGCTGCTGCTTCTTCACTCATGTCGTTCTTCTGCCCAGCCTCAAGGAGCGAAATTTCCTTACA TGACTTCGAATGTTGATGAGGTAGCAGGAAAGGCCTTTGACTACATTGTGGTAGGTGGAGGTGCAGCTGGTTGTCCTCTTGCAGCTACCCTCTCGAAGAA ATTCTCCGTTCTACTAATCGAGCGTGGTGGCTCGCCATATGGGAACCCGTGGATAACCGAGAAGCGCTTCTTTGGCTTCCCAATGCTCCAAACTGATGAA TTCTCGTCGGTCGCCCAACCATTGACTACCAAGGACGGAGTAACAATCTACAGAGGAAGAGTCCTTGGAGGGACAACGGCCATAAATGCAGGGTTCTACA GTAGAGCTAGCGACAGATTCGTCACGAAATCGGGTTGGGATAAACACCTGGTGAAGAAATCTTATGAATGGGTTGAATCTAAAATCATTACTAGACCTGT TGTGTTGTCAAAGTGGCAATCTTCTGTCAGGTCTGGATTCCTTGAAGCGGGAATCCTTCCTAACAACAGATTCACTTGGGAACACATCGAAGGAACGAAG ATTGGCGGATCCACATTTGATTCACGGAGCAAGAGACATACCTCTGCTGATCTTCTACGGACTGGTAGACCCAAGAACATCATAGTTCTGTTGAATGCTA CCGTCAAGAGTGTCATATTCAACAACGGAGAATCAAAAAAGACCACTGCTCGGGGAATCCAATTCATAAGCAGCCACGGTACTGGAGATCGAACCTATGA GGTTTACCTGAATCAACCCGCAAATCCAACTCGTTCGTCCGGGGATGTGATATTATCAGCGGGGGCATTAAGCAGCCCTCAGATCCTCCTACTGAGCGGA ATTGGACCAAAACCCCATCTCGACCAACTCAGCATCCCACTCGTCATCGAGTCAAACCATGTGGGACTCGAAGTGCAAGACAACCCGGCACTTCCCATCT TGGTCGGTTCGAAACTCGGAAACCAGCTCCCAGACACAACACAAGTTGCCGGAATAACAAAAGGATTCAATTTCATCATTGAAGGCTTCATCCTAGCACT AAGCTTCAACGCTACAGGGAACATTATATTGATCAAGCTAGCATTCCCGGAATCCAAAGGAAAGCTGGAACTAAACTCAACCGATCCCAGGAAGAACCCC AAAGTTTCATACAACTACTTGGAGACAGAGAAAGACATGGATGGATGTGTGGAGATGGCCAAGTTGGCAATGACCGTTGCCAAATCTCTATCTCCGGAGA CGAACGTAGTGTCGAATCCTGATGAGCTCCGGACTTACTGCAGAAAGAATGTCGGGAGTAACTTTCATTACCATGGTGGTTGCAATGTTGGATCAGTTGT CGATGAGGAATATAGAGTGGTTGGTGTCGATGGTTTGAGAGTTGTGGATGGTTCGACGTTCTCGGAAGCGCCTGGGACGAACCCGAGTGCTACCATTATG ATGCTTGGCAGGTATCTAGGGATCAGGATTCTTGCTGAGAGGAAGAAGTGA
AA sequence Show only first row Show all	>Lus10030460 pacid=23140623 polypeptide=Lus10030460 locus=Lus10030460.g ID=Lus10030460.BGIv1.0 annot-version=v1.0 MDQISIISLLLLLLLLLHSCRSSAQPQGAKFPYMTSNVDEVAGKAFDYIVVGGGAAGCPLAATLSKKFSVLLIERGGSPYGNPWITEKRFFGFPMLQTDE FSSVAQPLTTKDGVTIYRGRVLGGTTAINAGFYSRASDRFVTKSGWDKHLVKKSYEWVESKIITRPVVLSKWQSSVRSGFLEAGILPNNRFTWEHIEGTK IGGSTFDSRSKRHTSADLLRTGRPKNIIVLLNATVKSVIFNNGESKKTTARGIQFISSHGTGDRTYEVYLNQPANPTRSSGDVILSAGALSSPQILLLSG IGPKPHLDQLSIPLVIESNHVGLEVQDNPALPILVGSKLGNQLPDTTQVAGITKGFNFIIEGFILALSFNATGNIILIKLAFPESKGKLELNSTDPRKNP KVSYNYLETEKDMDGCVEMAKLAMTVAKSLSPETNVVSNPDELRTYCRKNVGSNFHYHGGCNVGSVVDEEYRVVGVDGLRVVDGSTFSEAPGTNPSATIM MLGRYLGIRILAERKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030460 [exp]	0	1
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10034374 [exp]	1.7	0.9457
AT3G53250			SAUR-like auxin-responsive pro...		Lus10009219 [exp]	3.2	0.9448
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Lus10020968 [exp]	3.6	0.9219
AT1G33590			Leucine-rich repeat (LRR) fami...		Lus10041064 [exp]	4.2	0.9345
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10037663 [exp]	4.9	0.9295
AT4G34640		ERG9, SQS1	squalene synthase 1 (.1)		Lus10017499 [exp]	6.0	0.9399
AT2G34830	WRKY	ATWRKY35, WRKY3...	maternal effect embryo arrest ...		Lus10038426 [exp]	8.1	0.9396
AT3G08030			Protein of unknown function, D...		Lus10016394 [exp]	8.7	0.9409
AT1G31770		ABCG14	ATP-binding cassette G14, ATP-...		Lus10037283 [exp]	9.2	0.9266
					Lus10038768 [exp]	12.6	0.8989

Compare expression of checked genes

Lus10030460 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.