Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14185 575 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14190 572 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G73050 357 / 4e-117 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G12570 356 / 8e-117 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G72970 354 / 1e-115 HTH, EDA17 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT3G56060 347 / 3e-113 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT5G51950 342 / 3e-111 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT5G51930 304 / 2e-96 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032641 [exp] 738 / 0 AT1G14185 608 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030459 [exp] 723 / 0 AT1G14185 605 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10026606 [exp] 714 / 0 AT1G14190 554 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030456 [exp] 714 / 0 AT1G14185 634 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10026607 [exp] 713 / 0 AT1G14185 605 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030460 [exp] 698 / 0 AT1G14185 555 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030457 [exp] 697 / 0 AT1G14185 589 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030462 [exp] 697 / 0 AT1G14185 567 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10012816 [exp] 680 / 0 AT1G14190 539 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G168100 [exp] 659 / 0 AT1G14185 654 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.008G087400 [exp] 626 / 0 AT1G14185 639 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G168200 [exp] 617 / 0 AT1G14190 598 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.001G111500 [exp] 363 / 2e-119 AT1G12570 773 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.008G009600 [exp] 346 / 4e-113 AT1G73050 785 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.003G039000 [exp] 341 / 1e-110 AT1G72970 808 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.001G200800 [exp] 341 / 1e-110 AT1G72970 831 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.012G135200 [exp] 268 / 4e-84 AT5G51950 525 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.010G249501 [exp] 60 / 1e-10 AT1G73050 164 / 7e-49 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05199 [flax] [poplar] GMC_oxred_C GMC oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00732 [flax] [poplar] GMC_oxred_N GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10030461 pacid=23140572 polypeptide=Lus10030461 locus=Lus10030461.g ID=Lus10030461.BGIv1.0 annot-version=v1.0 ATGGGGAATGGAAGGCTTCTTGCAGCTCTTACCCTGCTGATGATTTCGAGTCGTTGTATCCGCATTTTCGTTTATGCGGGAGGAGCGAAGTTTCCTTACA TGACTTCAAATGTCGACGAGGTAGCAGGAAAGTACTTCGACTATATTGTGGTAGGCGGAGGGGCAGCCGGTTGCCCTCTGGCAGCGACCCTCTCGGAGAA ATTCTCTGTTCTACTAATCGAGCGCGGTGGCTCGCCATATGGGAACCCGTGGATAACGGAGAAGCGCTTCTTCGGGTTCCCGTTGCTCCAGACCGACGAA TTCTTGTCGGTCTCCCAATCATTCACTTCCAAGGAAGGTGTGGGGAACCACAGAGGAAGAGTCCTCGGAGGATCAACGGCTATAAACGGAGGCTTCTACA GTCGAGCTAGCGACAATTACGTTACTACAGCGGGTTGGGATGAGGAGTTGGTGAAGGAATCTTATGAATGGGTTGAATCTAAGATCGTTACTGAACTTGA TCGGCTGACAACGTGCCAAGCTGCTGTGAAATCTGGACTCCTCGAAGCTGGGATTCTTCCTGACAATGGATTCACCTTGGAACATGTCGAAGGAACGAAG ATCGGTGGGTCTACGTTTGATAATCGGGGGAAGAGACATACCTCTGCTGATCTTTTGATGGCGGGCAGGCCGGAGAACATCACTGTTCTTTTGAATGCAA CGGTCAAGAGCGTCATATTCAATAATGGGGAATCAAATAAGACCATTGCTCGCGGCATCAAATTCATACGCAGCAATGGCGACGGAGATCGAACCTATGA AGCTTACCTCAACCAACCCAAAACTCAGAATCGTTCGTCCTCCTCGGGGGACGTGATATTATCCGCAGGGGCATTAGGCAGCCCTCAAATCCTCCTACTT AGCGGCATCGGACCGAAGACCCATCTCACTCAACTGGACATCCCACTAGTCCTCGAATCGAACCAAGTGGGATGCGAGATTCAAGACAACCCGGGAATCT ACATCCCGGTCGATGCAAAACCCGGACGTCGGCTAACGGACACACCACAAGTAGTAGGAATAACAAAAGGATTCAACTTCATCATTCACGCCGGTATAGG GCGGATTGGCCTCAACGCTACGAGGGTCGTGGTAGCAGCCAAGGTAGCATTCCCGGAATCCAGAGGGAAGCTGGAACTGAACTCGACCGATCCCAGGAAG AACCCTGTAGTCTCGTACAACTACTTGGAGACGGAGAAAGACATGGATGGGTGCGTGGAGCTGACCAAATTGTTGCATAAGGTTGCCGCTTCTCGAGCTG TGAAGAGGTTCCTGGGGAATGTAGCTCGGGGTAACTTGACGAGGAATCCTAATGGGATGAGGAGTCTTTGCAGGATGAATGTGAGGACTTACTATCATTA CCATGGTGGGTGTGGAGTTGGATCAGTTGTTGGTCAGGATTACAGAGTGGTTGGTGTTGATGGTTTGAGAGTCGTCGATGGGTCGACTTTCCTCGAGTCG CCTGGGACGAATCCGATGGCTACGGTTCTGATGCTTGGTAGATATCAGGGGATCAAGATTCTTGCTGAGAGGGAGAATCATGATCAGTAA
AA sequence Show only first row Show all	>Lus10030461 pacid=23140572 polypeptide=Lus10030461 locus=Lus10030461.g ID=Lus10030461.BGIv1.0 annot-version=v1.0 MGNGRLLAALTLLMISSRCIRIFVYAGGAKFPYMTSNVDEVAGKYFDYIVVGGGAAGCPLAATLSEKFSVLLIERGGSPYGNPWITEKRFFGFPLLQTDE FLSVSQSFTSKEGVGNHRGRVLGGSTAINGGFYSRASDNYVTTAGWDEELVKESYEWVESKIVTELDRLTTCQAAVKSGLLEAGILPDNGFTLEHVEGTK IGGSTFDNRGKRHTSADLLMAGRPENITVLLNATVKSVIFNNGESNKTIARGIKFIRSNGDGDRTYEAYLNQPKTQNRSSSSGDVILSAGALGSPQILLL SGIGPKTHLTQLDIPLVLESNQVGCEIQDNPGIYIPVDAKPGRRLTDTPQVVGITKGFNFIIHAGIGRIGLNATRVVVAAKVAFPESRGKLELNSTDPRK NPVVSYNYLETEKDMDGCVELTKLLHKVAASRAVKRFLGNVARGNLTRNPNGMRSLCRMNVRTYYHYHGGCGVGSVVGQDYRVVGVDGLRVVDGSTFLES PGTNPMATVLMLGRYQGIKILAERENHDQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030461 [exp]	0	1
AT5G16100			unknown protein		Lus10004035 [exp]	2.4	0.7095
AT5G62420			NAD(P)-linked oxidoreductase s...		Lus10031739 [exp]	4.9	0.7779
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016224 [exp]	8.6	0.7717
AT4G25040			Uncharacterised protein family...		Lus10043192 [exp]	8.7	0.6058
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10014605 [exp]	11.5	0.6914
					Lus10003636 [exp]	16.6	0.7041
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10001110 [exp]	18.5	0.6938
					Lus10005608 [exp]	20.2	0.7008
					Lus10008440 [exp]	20.8	0.6948
AT5G62420			NAD(P)-linked oxidoreductase s...		Lus10031162 [exp]	21.7	0.7059

Compare expression of checked genes

Lus10030461 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.