Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14185 566 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14190 563 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G12570 367 / 4e-121 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G72970 356 / 1e-116 HTH, EDA17 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT5G51950 354 / 2e-116 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT3G56060 353 / 1e-115 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G73050 350 / 6e-115 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT5G51930 319 / 1e-102 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030459 [exp] 744 / 0 AT1G14185 605 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10032641 [exp] 738 / 0 AT1G14185 608 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030461 [exp] 725 / 0 AT1G14185 596 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030463 [exp] 704 / 0 AT1G14185 504 / 5e-176 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030456 [exp] 693 / 0 AT1G14185 634 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10012818 [exp] 677 / 0 AT1G14185 499 / 2e-170 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10026606 [exp] 665 / 0 AT1G14190 554 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030460 [exp] 663 / 0 AT1G14185 555 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10026607 [exp] 657 / 0 AT1G14185 605 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G168100 [exp] 630 / 0 AT1G14185 654 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.008G087400 [exp] 616 / 0 AT1G14185 639 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G168200 [exp] 604 / 0 AT1G14190 598 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.001G111500 [exp] 382 / 3e-127 AT1G12570 773 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.008G009600 [exp] 353 / 4e-116 AT1G73050 785 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.003G039000 [exp] 344 / 4e-112 AT1G72970 808 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.001G200800 [exp] 337 / 2e-109 AT1G72970 831 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.012G135200 [exp] 244 / 5e-75 AT5G51950 525 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.010G249501 [exp] 41 / 0.0003 AT1G73050 164 / 7e-49 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05199 [flax] [poplar] GMC_oxred_C GMC oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00732 [flax] [poplar] GMC_oxred_N GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10030462 pacid=23140764 polypeptide=Lus10030462 locus=Lus10030462.g ID=Lus10030462.BGIv1.0 annot-version=v1.0 ATGAGCCACTTTAGGCCTTATGGTGACAAGTTTCCTACAGCTTTTACCCTGCTGCTTCTGCTGCTTCTTCTTCACTCATGTCCTTCTTCTTCTGCCGAGC CTCGAGCAGCGGAATTTCCTTACATGACTTCAAATGTCGATGAGGTAGCAGGAAAGTCGTTCGACTACATTGTGGTAGGCGGAGGGGCAGCTGGCTGTCC TATTGCGGCTACCCTCTCGGAGAAATTCTCCGTTCTACTAATCGAGCGTGGTGGATCGCCATATGGGAACCCGTGGATAACAGAGAAACGCTTCTTTGGC TTCCCGTTGCTTCGAACTGATGAATTCTCGTCGGTGTCCCAATCATTCACTTCAAAGGATGGTGTGGCGAACCATAGAGGAAGAGTCCTCGGAGGATCAA CGGCTATAAATGGAGGGTTCTACAGTCGAGCTAGTGACAATTACGTCAGGGCAGCGGGTTGGAATGAGGAGCTGGTGAAGGAATCTTATGAATGGGTGGA ATCAAGAATCATTACTAGTAAACCTGAGCTAACCAAATGGAAAGCTGCTGTGAAATCTGGATTACTTGAATCCGGGTTTCTTCCTGACCACGGATTCACC TTGGAACATGTCGAAGGAACGAAGATCAGTGGGTCTATATTTGATAATCGGGGGAAGAGACATACTTCCGCTGATCTTCTTCAGGCCGGGAGGCCAGAAA ACATCACAGTTCTCTTGAATGCAACGGTAAAGAGTGTCATATTTATCAACAAAGGAGAATCAAACATGACCATTGCTCGTGGAATTCGGTTCATCATCAG CAGTCGGGACGAAGATCGAACCTATGAAGCGATTCTCCTACTAAGTGGCATCGGACCGAAACCCCATCTCAGCCAACTCAACATCCCAATCGTCCTCGAA TCAGACAAAGTGGGACAGGATGTGAAAGACAACCCCTCAGTTTCCATCCAAGTCGATTCTGAGCCCAAGTACCGGGTCCCAGACATAGCACCAGTAGTAG GCATAAGAAAAGGATCTGATTTCATCATTGAAAGCCTCATCGCACCATTCAGCTTCAACGCTACGACAATCCAAATAGTAGCCAAGCTATCATTCCCGGA ATCGAAAGGGAAGCTAGAACTGAACTCGGCCGATCCCAGGAAGAACCCTGAAGTCTCGTTCAACTACTTGGAGTCGAAGAAAGACATGGATGTGTGTGTG GAGATGACCGAGCTGATGTATAAGGTTGCGAGTTCTCGAGCTGTGGAGAGGTTCCGAGGGAATGTAGCTCAGGGCGGTAACTTGACTACGAATCCTGATG AGTTGCGGACTTTCTGTAGGAGGAATGTCAGGACTTTTTATCATTACCATGGTGGGTGCGTAGTTGGATCGGTTGTTGGCGAGGATTATAGAGTGGTTGG TGTTGAAGGTTTGAGAGTCGTTGATGGGTCGACTTTCCTCGAGTCGCCTGGGACGAACCCGATGGCTACCGTTCTAATGCTTGGTAGATATCAAGGGATC AAGATTCTAGCTGAGAGGGAGAATAATTAA
AA sequence Show only first row Show all	>Lus10030462 pacid=23140764 polypeptide=Lus10030462 locus=Lus10030462.g ID=Lus10030462.BGIv1.0 annot-version=v1.0 MSHFRPYGDKFPTAFTLLLLLLLLHSCPSSSAEPRAAEFPYMTSNVDEVAGKSFDYIVVGGGAAGCPIAATLSEKFSVLLIERGGSPYGNPWITEKRFFG FPLLRTDEFSSVSQSFTSKDGVANHRGRVLGGSTAINGGFYSRASDNYVRAAGWNEELVKESYEWVESRIITSKPELTKWKAAVKSGLLESGFLPDHGFT LEHVEGTKISGSIFDNRGKRHTSADLLQAGRPENITVLLNATVKSVIFINKGESNMTIARGIRFIISSRDEDRTYEAILLLSGIGPKPHLSQLNIPIVLE SDKVGQDVKDNPSVSIQVDSEPKYRVPDIAPVVGIRKGSDFIIESLIAPFSFNATTIQIVAKLSFPESKGKLELNSADPRKNPEVSFNYLESKKDMDVCV EMTELMYKVASSRAVERFRGNVAQGGNLTTNPDELRTFCRRNVRTFYHYHGGCVVGSVVGEDYRVVGVEGLRVVDGSTFLESPGTNPMATVLMLGRYQGI KILAERENN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030462 [exp]	0	1
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10012609 [exp]	2.4	0.9496
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10018730 [exp]	14.4	0.9560
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10011346 [exp]	20.8	0.9526
AT1G17860			Kunitz family trypsin and prot...		Lus10013732 [exp]	22.4	0.9468
AT1G34300			lectin protein kinase family p...		Lus10012659 [exp]	22.4	0.9383
AT5G60335			Thioesterase superfamily prote...		Lus10031971 [exp]	24.6	0.9515
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Lus10023824 [exp]	28.1	0.9512
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Lus10024676 [exp]	33.8	0.9482
AT1G06000			UDP-Glycosyltransferase superf...		Lus10007971 [exp]	34.5	0.9500
AT3G11840		PUB24	plant U-box 24 (.1)		Lus10008368 [exp]	36.3	0.9490

Compare expression of checked genes

Lus10030462 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.