Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14185 503 / 1e-175 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14190 503 / 2e-175 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G73050 310 / 2e-99 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT3G56060 303 / 2e-96 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT5G51950 302 / 2e-96 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT1G72970 303 / 3e-96 HTH, EDA17 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT1G12570 300 / 2e-95 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT5G51930 269 / 2e-83 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032641 [exp] 702 / 0 AT1G14185 608 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030462 [exp] 686 / 0 AT1G14185 567 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030461 [exp] 677 / 0 AT1G14185 596 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030459 [exp] 659 / 0 AT1G14185 605 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030460 [exp] 649 / 0 AT1G14185 555 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10012818 [exp] 644 / 0 AT1G14185 499 / 2e-170 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10026606 [exp] 640 / 0 AT1G14190 554 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030456 [exp] 631 / 0 AT1G14185 634 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030457 [exp] 617 / 0 AT1G14185 589 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G168100 [exp] 592 / 0 AT1G14185 654 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.008G087400 [exp] 563 / 0 AT1G14185 639 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G168200 [exp] 563 / 0 AT1G14190 598 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.001G111500 [exp] 312 / 5e-100 AT1G12570 773 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.003G039000 [exp] 311 / 2e-99 AT1G72970 808 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.008G009600 [exp] 305 / 2e-97 AT1G73050 785 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.001G200800 [exp] 301 / 1e-95 AT1G72970 831 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.012G135200 [exp] 206 / 6e-61 AT5G51950 525 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.010G249501 [exp] 54 / 1e-08 AT1G73050 164 / 7e-49 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05199 [flax] [poplar] GMC_oxred_C GMC oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00732 [flax] [poplar] GMC_oxred_N GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10030463 pacid=23140691 polypeptide=Lus10030463 locus=Lus10030463.g ID=Lus10030463.BGIv1.0 annot-version=v1.0 ATGGGGATCAATGGGAAGCTTCTTACAGCTCTTACCTTACTGATTATCCTGCTGTTTAACTCATGTCATTCTTTTGCTCAGCCTCGAGGAGTGAAATTTC CTTACATGACTTCAAATGTCGACGAGGTAGCAGGAAGGTCGTTTGACTACATTGTAGTAGGCGGAGGGGCAGCCGGTTGCCCCCTTGCAGCCACCCTTTC GGAGAAATTCTCCGTTCTACTAATCGAACGAGGTGGATCGCCATATGGGAACCCGTGGATAACAGAGAAGCGCTTCTTTGGCTTACCATTGCTCCAGACC GATGAATTCTCGTCGGTCTCCCAATCATTCACTTGCAAGGAAGGAATAGCAAACCACAGAGGAAGGGTCCTTGGAGGATCAACGGCTATAAATGGAGGGT TCTACGGTAGAGCTAGTGACAGATTCGTTACGAAATCGGGTTGGGATAAGCAGCTGGTGAAGGAATCTTATGAATGGATTGAATCTGAAATCGTTACTAG AAAACCTGAGCTGACCATATGGAAAGCTGCTGTGAAATCTGGATTACTTGAATCCGGACATACCTCCGCTGATCTTCTGCAAGCGGGAAGGCTGGAAAAT ATAATAGTTCTCTTGAATGCCACGGTAAAGAGTGTCATATTCAACAAAGGAGAATCAAACTTGACCATTGCTCGCGGAATCCAATTTATAACCAGCAATG GCGAGGGAGATCGAACCTATGAAGCATACCTCAACCAACCCGAAACCCCGACTAGTTCCTCCTTGGGGGACGTGATATTATCCGCAGGGGCATTAGGCAG CCCTCAGATCCTCCTACTAAGTGACATCGGACCGAAACCCCATCTCAACCAACTCAACATCCCGGTCGTACTTGAATCGAACCAGGTGGGACATGATGTG AAAGACGACCTTTCAGTATCCATCCGGGTCGAATTGAACCCCAAGCATCAGGTCCCAGACTTAGCACCACTGGCAGGCATAAGAAAAGGATCCGACTTAA TCATTGAAAGCCTCACCGTACCATTCGGCTTGAACTGTACGGGGATTGTAGTAGTAGCCGCCAAGCTAACATTCCAGATATCCAAAAGGAAGCTGGAACT GAACTCGACCGATCCCAGGAAGAACCCTCAAGTCTCGTACAACTACTTGGAGTCGGAAAAAGACATGGATGTGTGTGTGGAGATGACCCAAGTTTTGAAT AAGGTTGCCAGTTCTCGAGCTGTAGAGAGGTTCCTAGGGAATGTAGCTCAGGTTAACTTGACAAGGAATCATGATGAGCTGCGGACTTTCTGCAGGAGTA AGTTGAGGAGTTTCTATCATTACCATGGTGGGTGTGGAGTTGGATCAGTTGTTGATCAGGATTATAGAGTGCTTGGTGTTGAAGGTTTGAGAGTCGTCGA CGGGTCGACTTTTCTCGAGTCGCCCGGGACTAATCCGATGGCTGCCGTTCTGATGCTTGGTAGACATCAGGGAATCAAGATTCTTGCTGAGGGAGAATAA
AA sequence Show only first row Show all	>Lus10030463 pacid=23140691 polypeptide=Lus10030463 locus=Lus10030463.g ID=Lus10030463.BGIv1.0 annot-version=v1.0 MGINGKLLTALTLLIILLFNSCHSFAQPRGVKFPYMTSNVDEVAGRSFDYIVVGGGAAGCPLAATLSEKFSVLLIERGGSPYGNPWITEKRFFGLPLLQT DEFSSVSQSFTCKEGIANHRGRVLGGSTAINGGFYGRASDRFVTKSGWDKQLVKESYEWIESEIVTRKPELTIWKAAVKSGLLESGHTSADLLQAGRLEN IIVLLNATVKSVIFNKGESNLTIARGIQFITSNGEGDRTYEAYLNQPETPTSSSLGDVILSAGALGSPQILLLSDIGPKPHLNQLNIPVVLESNQVGHDV KDDLSVSIRVELNPKHQVPDLAPLAGIRKGSDLIIESLTVPFGLNCTGIVVVAAKLTFQISKRKLELNSTDPRKNPQVSYNYLESEKDMDVCVEMTQVLN KVASSRAVERFLGNVAQVNLTRNHDELRTFCRSKLRSFYHYHGGCGVGSVVDQDYRVLGVEGLRVVDGSTFLESPGTNPMAAVLMLGRHQGIKILAEGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030463 [exp]	0	1
AT5G24600			Protein of unknown function, D...		Lus10005272 [exp]	2.0	0.8856
					Lus10010271 [exp]	2.4	0.8992
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10027514 [exp]	5.5	0.8468
AT4G39420			unknown protein		Lus10008760 [exp]	8.3	0.8774
AT3G28960			Transmembrane amino acid trans...		Lus10023029 [exp]	9.6	0.8641
AT5G66740			Protein of unknown function (D...		Lus10014323 [exp]	10.0	0.8302
AT5G13220	ZIM	JAS1, TIFY9, JA...	TIFY DOMAIN PROTEIN 9, JASMONA...		Lus10002576 [exp]	16.4	0.8172
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10009517 [exp]	18.6	0.8530
AT2G40740	WRKY	ATWRKY55, WRKY5...	WRKY DNA-binding protein 55 (....		Lus10029022 [exp]	23.3	0.7234
AT2G41660		MIZ1	mizu-kussei 1, Protein of unkn...		Lus10042046 [exp]	23.8	0.7228

Compare expression of checked genes

Lus10030463 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.