Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26800 155 / 4e-47 RING/U-box superfamily protein (.1) AT1G14200 100 / 6e-26 RING/U-box superfamily protein (.1) AT5G56340 96 / 7e-23 ATCRT1 RING/U-box superfamily protein (.1) AT3G19950 94 / 1e-22 RING/U-box superfamily protein (.1) AT3G13430 90 / 5e-21 RING/U-box superfamily protein (.1.2.3) AT1G55530 86 / 2e-19 RING/U-box superfamily protein (.1) AT5G59550 84 / 2e-18 zinc finger (C3HC4-type RING finger) family protein (.1) AT4G26400 83 / 2e-18 RING/U-box superfamily protein (.1.2) AT3G46620 79 / 7e-17 zinc finger (C3HC4-type RING finger) family protein (.1) AT3G56580 78 / 9e-17 RING/U-box superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012819 [exp] 284 / 2e-97 AT1G26800 182 / 6e-58 RING/U-box superfamily protein (.1) Lus10036757 [exp] 154 / 2e-46 AT1G26800 127 / 1e-36 RING/U-box superfamily protein (.1) Lus10037170 [exp] 152 / 1e-45 AT1G26800 128 / 5e-37 RING/U-box superfamily protein (.1) Lus10002637 [exp] 95 / 2e-22 AT1G55530 257 / 4e-82 RING/U-box superfamily protein (.1) Lus10020258 [exp] 95 / 4e-22 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3) Lus10013397 [exp] 93 / 1e-21 AT5G56340 330 / 5e-111 RING/U-box superfamily protein (.1) Lus10010179 [exp] 82 / 1e-18 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10031422 [exp] 74 / 3e-15 AT5G64920 210 / 5e-66 COP1-interacting protein 8 (.1) Lus10040278 [exp] 73 / 3e-15 AT5G59550 224 / 2e-71 zinc finger (C3HC4-type RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G087200 [exp] 178 / 6e-56 AT1G26800 194 / 6e-63 RING/U-box superfamily protein (.1) Potri.010G168300 [exp] 175 / 9e-55 AT1G26800 195 / 4e-63 RING/U-box superfamily protein (.1) Potri.003G223200 [exp] 92 / 2e-21 AT5G56340 301 / 3e-99 RING/U-box superfamily protein (.1) Potri.019G032500 [exp] 91 / 5e-21 AT5G56340 177 / 1e-51 RING/U-box superfamily protein (.1) Potri.005G090500 [exp] 89 / 7e-21 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1) Potri.004G122000 [exp] 85 / 2e-20 AT1G26800 94 / 1e-24 RING/U-box superfamily protein (.1) Potri.007G074014 [exp] 87 / 6e-20 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.013G060500 [exp] 87 / 6e-20 AT1G55530 207 / 2e-64 RING/U-box superfamily protein (.1) Potri.001G001500 [exp] 85 / 6e-19 AT5G56340 323 / 2e-108 RING/U-box superfamily protein (.1) Potri.012G036700 [exp] 82 / 4e-18 AT3G19950 273 / 5e-90 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10030464 pacid=23140629 polypeptide=Lus10030464 locus=Lus10030464.g ID=Lus10030464.BGIv1.0 annot-version=v1.0 ATGTCGTCCGATTCAGAGGTCCCAGAGCTAGCCACGTTGTTCGAGCGGCTCATGTCACGGCAGCGAGACTTCTCCATGTTTTTCCCGTTCATCCTGGGTC TAACCAGAGCCGGATCGGAAGGAAACCCAGAAGCCGAAGAAGAAGAAGATGGGGAAGGAGAAAGAAGAAGATTAGCTAATTCGACGGACAGGATGATTCT GATCAACCCGTTGACGCAAGGGATGGTGGTGATAGAAGGAGCAGCAGTGGGAGGGTTCGATTCACTGATCAGAGACTTGTTGTCGTCGACGGCGAGGAAT GGCAGTGGGCAGCCGCCGGCTTCCAAGGCTTCGATTGAAGGGCTGGAGACTGTGGAGGTGAGTAAGGACTGTGGGGGAGAGTGTGTGATTTGTTTGGATG AGTGGAAGAAAGAAGGCGAAGTTGTGAAGGAGATGCCTTGCAAGCACAGGTTCCATGGCGGGTGTGTGGAGACGTGGCTTAGGGTTCATGGGTCGTGCCC TGTTTGCAGGTTTCAGATGCCTGTTGAGGAAGAGGAGTTAAGGAAGAAAGATGATGAAGAAGAAAGGAGGGTTGATAGGGAGATTTGGGTTAGCTTCTCT GTTGGTGGTAGGAGGAGGAGTGATTCGAGCTCGAATTCGGAACAGAGTGGTGGTGATGCAGGGGATGATGCTAATGGTGGTGCTGGGAATGGAAATGGTG ATTCGACAAGCTTTGAGTCGATAGATTAG
AA sequence Show only first row Show all	>Lus10030464 pacid=23140629 polypeptide=Lus10030464 locus=Lus10030464.g ID=Lus10030464.BGIv1.0 annot-version=v1.0 MSSDSEVPELATLFERLMSRQRDFSMFFPFILGLTRAGSEGNPEAEEEEDGEGERRRLANSTDRMILINPLTQGMVVIEGAAVGGFDSLIRDLLSSTARN GSGQPPASKASIEGLETVEVSKDCGGECVICLDEWKKEGEVVKEMPCKHRFHGGCVETWLRVHGSCPVCRFQMPVEEEELRKKDDEEERRVDREIWVSFS VGGRRRSDSSSNSEQSGGDAGDDANGGAGNGNGDSTSFESID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26800			RING/U-box superfamily protein...		Lus10030464 [exp]	0	1
AT4G25200		ATHSP23.6-MITO	mitochondrion-localized small ...		Lus10031154 [exp]	4.2	0.9043
					Lus10042010 [exp]	8.8	0.8287
AT4G27310	CO		B-box type zinc finger family ...		Lus10031593 [exp]	13.4	0.8227
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10040527 [exp]	14.1	0.8500
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10021159 [exp]	18.0	0.8406
AT1G55310		ATSCL33, SR33, ...	SC35-like splicing factor 33 (...		Lus10016215 [exp]	19.1	0.8317
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Lus10007976 [exp]	19.7	0.8391
AT3G07090			PPPDE putative thiol peptidase...		Lus10025931 [exp]	19.8	0.8152
AT1G06210			ENTH/VHS/GAT family protein (....		Lus10022922 [exp]	20.8	0.7867
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10040528 [exp]	22.0	0.8394

Compare expression of checked genes

Lus10030464 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.