Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14205 174 / 1e-56 Ribosomal L18p/L5e family protein (.1) AT1G48350 77 / 2e-18 EMB3105 EMBRYO DEFECTIVE 3105, Ribosomal L18p/L5e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012820 [exp] 270 / 4e-94 AT1G14205 182 / 2e-59 Ribosomal L18p/L5e family protein (.1) Lus10039092 [exp] 76 / 9e-18 AT1G48350 216 / 6e-73 EMBRYO DEFECTIVE 3105, Ribosomal L18p/L5e family protein (.1) Lus10038770 [exp] 75 / 1e-17 AT1G48350 216 / 6e-73 EMBRYO DEFECTIVE 3105, Ribosomal L18p/L5e family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G087100 [exp] 176 / 1e-57 AT1G14205 202 / 2e-67 Ribosomal L18p/L5e family protein (.1) Potri.010G005000 [exp] 75 / 1e-17 AT1G48350 229 / 4e-78 EMBRYO DEFECTIVE 3105, Ribosomal L18p/L5e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0267 [flax] [poplar] S11_L18p PF00861 [flax] [poplar] Ribosomal_L18p Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Representative CDS sequence Show only first row Show all	>Lus10030465 pacid=23140566 polypeptide=Lus10030465 locus=Lus10030465.g ID=Lus10030465.BGIv1.0 annot-version=v1.0 ATGAGCTTGGTTGCAAGTTCGAGGAAGAACACCAAAACGGAGAGCGCCAAAACCCTTAACAGGAGGAGGCAAAACAAGTTCAATGGGACGCCTTTGAAAC CGAGGCTGTCGGTGTTCAGTTCAGGGAAGCAGCTGTATGCAATGCTGGTGGATGATCAGAACAAGAAGAGCTTGTTCTACGGGAGCACCTTGCAGAAGTC GATTCGTGGCGACCTGCCTTGTTCCGCCATTGAAGCTGCTGAAAGGCTGGGTGAGGAGGTGATCAAGGCGTGTGTTGAGCTCGAGATCGAGGAAGTGTCA TACGATCGGAATGGGAATCCGGCTCGTGGGGAGAAGATGCAGGCGTTCGAGACTGTGATTTCTCGACACGGCTTCTTGCCTGATCGAGCGACAAGGTCTC GACGGGTTCCTGCGACATCGTCTTAG
AA sequence Show only first row Show all	>Lus10030465 pacid=23140566 polypeptide=Lus10030465 locus=Lus10030465.g ID=Lus10030465.BGIv1.0 annot-version=v1.0 MSLVASSRKNTKTESAKTLNRRRQNKFNGTPLKPRLSVFSSGKQLYAMLVDDQNKKSLFYGSTLQKSIRGDLPCSAIEAAERLGEEVIKACVELEIEEVS YDRNGNPARGEKMQAFETVISRHGFLPDRATRSRRVPATSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14205			Ribosomal L18p/L5e family prot...		Lus10030465 [exp]	0	1
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10034300 [exp]	2.4	0.9618
AT5G52400		CYP715A1	"cytochrome P450, family 715, ...		Lus10027480 [exp]	7.5	0.9612
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10033385 [exp]	8.2	0.9325
					Lus10024873 [exp]	8.5	0.9577
AT5G49630		AAP6	amino acid permease 6 (.1)		Lus10007235 [exp]	9.2	0.9581
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006700 [exp]	10.7	0.9299
AT1G14205			Ribosomal L18p/L5e family prot...		Lus10012820 [exp]	15.9	0.9410
AT4G23690			Disease resistance-responsive ...		Lus10024714 [exp]	18.8	0.9557
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10017826 [exp]	21.1	0.8966
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Lus10036014 [exp]	23.6	0.9513

Compare expression of checked genes

Lus10030465 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.