Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09157 223 / 3e-73 Protein of unknown function (DUF679) (.1) AT5G39650 220 / 4e-72 DAU2 DUO1-activated unknown 2, Protein of unknown function (DUF679) (.1) AT3G02430 141 / 8e-42 Protein of unknown function (DUF679) (.1) AT4G24310 132 / 3e-38 Protein of unknown function (DUF679) (.1) AT5G46090 122 / 2e-34 Protein of unknown function (DUF679) (.1) AT4G18425 120 / 9e-34 Protein of unknown function (DUF679) (.1) AT5G27370 107 / 6e-29 Protein of unknown function (DUF679) (.1) AT3G21520 91 / 2e-22 AtDMP1 Arabidopsis thaliana DUF679 domain membrane protein 1, DUF679 domain membrane protein 1 (.1) AT3G21550 87 / 3e-21 AtDMP2 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) AT4G28485 84 / 5e-20 AtDMP7 Arabidopsis thaliana DUF679 domain membrane protein 7, DUF679 domain membrane protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012821 [exp] 382 / 4e-136 AT5G39650 246 / 3e-82 DUO1-activated unknown 2, Protein of unknown function (DUF679) (.1) Lus10015394 [exp] 142 / 5e-42 AT4G18425 273 / 1e-93 Protein of unknown function (DUF679) (.1) Lus10013969 [exp] 141 / 2e-41 AT4G18425 274 / 5e-94 Protein of unknown function (DUF679) (.1) Lus10013975 [exp] 134 / 1e-38 AT4G18425 257 / 3e-87 Protein of unknown function (DUF679) (.1) Lus10013974 [exp] 126 / 9e-36 AT4G18425 238 / 1e-79 Protein of unknown function (DUF679) (.1) Lus10036581 [exp] 125 / 2e-35 AT3G02430 255 / 1e-86 Protein of unknown function (DUF679) (.1) Lus10015396 [exp] 125 / 5e-35 AT5G46090 239 / 3e-80 Protein of unknown function (DUF679) (.1) Lus10013971 [exp] 122 / 3e-34 AT5G46090 234 / 2e-78 Protein of unknown function (DUF679) (.1) Lus10018635 [exp] 122 / 5e-34 AT5G46090 192 / 8e-62 Protein of unknown function (DUF679) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G087000 [exp] 291 / 1e-100 AT1G09157 254 / 1e-85 Protein of unknown function (DUF679) (.1) Potri.010G168400 [exp] 288 / 3e-99 AT1G09157 223 / 2e-73 Protein of unknown function (DUF679) (.1) Potri.004G049000 [exp] 135 / 3e-39 AT4G18425 276 / 6e-95 Protein of unknown function (DUF679) (.1) Potri.003G008600 [exp] 135 / 3e-39 AT3G02430 185 / 6e-59 Protein of unknown function (DUF679) (.1) Potri.011G058000 [exp] 132 / 2e-38 AT4G18425 247 / 8e-84 Protein of unknown function (DUF679) (.1) Potri.004G223500 [exp] 129 / 6e-37 AT3G02430 195 / 1e-62 Protein of unknown function (DUF679) (.1) Potri.017G016300 [exp] 126 / 7e-36 AT4G18425 203 / 2e-66 Protein of unknown function (DUF679) (.1) Potri.013G027200 [exp] 103 / 4e-27 AT5G27370 153 / 5e-47 Protein of unknown function (DUF679) (.1) Potri.013G116300 [exp] 95 / 1e-23 AT3G02430 94 / 9e-24 Protein of unknown function (DUF679) (.1) Potri.010G027600 [exp] 86 / 2e-20 AT3G21550 202 / 1e-66 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05078 [flax] [poplar] DUF679 Protein of unknown function (DUF679)
Representative CDS sequence Show only first row Show all	>Lus10030466 pacid=23140539 polypeptide=Lus10030466 locus=Lus10030466.g ID=Lus10030466.BGIv1.0 annot-version=v1.0 ATGGAGGAAGACGACTATGGAATCAAAATCTACGTCCCACCTTCATCATCATCCGGCCGCAAAAACGATCGAAAGCCACCGACTTCCCCTCCGCATCCAC CGCCACCACCATGCACATCATCACTATGCCTAACACAAGCACCGAAGAAGCCAGGGAGCAAAAGAAGAGCAATGGCAAAAGGAGTACAAAACACAATGTC CAAGACATCACTACTCGTCAACTTCCTCCCGACCGGCACCCTCCTAACCTTCGAGATGCTCCTCCCGTCAATCTCGAAGAACGGAGAGTGCACCCACGTC ACCACCATGATGATCTACGTGCTACTTGGACTCTGCTCCCTCTCATGCTTCTTCTTTCACTTCACGGACAGTTTCAAGGATCCCGATGGGAAAGTTTACT ATGGGTTCGTGACGCCTAGTGGGCTGGCAGTGTTCAAGCCGGGGCTGGGGATTGATGTCCCTAAAGATGAGAAGTATAAGCTCGGGTTCACCGACTTTGT CCATGCCGCGATGTCGGTGATGGTGTTCATGGCGATCGCGTTCTCGGATCATCGAGTCACGGATTGTCTGTTCCCTGGACATGTCAAGGAGATGGATGAG GTGATGGAGAGTTTCCCTTTGATGGTTGGTGTTGTTTGTAGTGGCTTGTTCTTGGTTTTTCCTACTACTAGGTATGGGATTGGGTGCAGTGCTAGTTAG
AA sequence Show only first row Show all	>Lus10030466 pacid=23140539 polypeptide=Lus10030466 locus=Lus10030466.g ID=Lus10030466.BGIv1.0 annot-version=v1.0 MEEDDYGIKIYVPPSSSSGRKNDRKPPTSPPHPPPPPCTSSLCLTQAPKKPGSKRRAMAKGVQNTMSKTSLLVNFLPTGTLLTFEMLLPSISKNGECTHV TTMMIYVLLGLCSLSCFFFHFTDSFKDPDGKVYYGFVTPSGLAVFKPGLGIDVPKDEKYKLGFTDFVHAAMSVMVFMAIAFSDHRVTDCLFPGHVKEMDE VMESFPLMVGVVCSGLFLVFPTTRYGIGCSAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09157			Protein of unknown function (D...		Lus10030466 [exp]	0	1
AT3G02100			UDP-Glycosyltransferase superf...		Lus10021163 [exp]	1.4	0.8524
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10021328 [exp]	2.8	0.8361
AT1G20500			AMP-dependent synthetase and l...		Lus10020473 [exp]	3.9	0.8430
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10009684 [exp]	4.2	0.8102
AT2G44290			Bifunctional inhibitor/lipid-t...		Lus10017749 [exp]	4.5	0.8532
AT3G57620			glyoxal oxidase-related protei...		Lus10015949 [exp]	5.9	0.8287
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10017004 [exp]	8.8	0.8013
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10026409 [exp]	10.2	0.8162
AT2G34930			disease resistance family prot...		Lus10002757 [exp]	12.6	0.7455
AT2G26530		AR781	Protein of unknown function (D...		Lus10032766 [exp]	13.0	0.7950

Compare expression of checked genes

Lus10030466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.