Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26810 767 / 0 GALT1 galactosyltransferase1 (.1) AT3G06440 496 / 2e-169 Galactosyltransferase family protein (.1.2) AT1G74800 357 / 6e-115 Galactosyltransferase family protein (.1) AT5G62620 345 / 4e-110 Galactosyltransferase family protein (.1.2) AT1G27120 338 / 9e-108 Galactosyltransferase family protein (.1) AT4G21060 323 / 1e-101 Galactosyltransferase family protein (.1.2) AT2G26100 87 / 2e-18 Galactosyltransferase family protein (.1) AT3G14960 83 / 7e-17 Galactosyltransferase family protein (.1) AT1G53290 81 / 3e-16 Galactosyltransferase family protein (.1) AT1G11730 60 / 2e-09 Galactosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012822 [exp] 1181 / 0 AT1G26810 828 / 0.0 galactosyltransferase1 (.1) Lus10036756 [exp] 1044 / 0 AT1G26810 831 / 0.0 galactosyltransferase1 (.1) Lus10037171 [exp] 968 / 0 AT1G26810 764 / 0.0 galactosyltransferase1 (.1) Lus10032650 [exp] 537 / 0 AT3G06440 659 / 0.0 Galactosyltransferase family protein (.1.2) Lus10043102 [exp] 464 / 3e-157 AT3G06440 575 / 0.0 Galactosyltransferase family protein (.1.2) Lus10004256 [exp] 345 / 5e-110 AT5G62620 961 / 0.0 Galactosyltransferase family protein (.1.2) Lus10042164 [exp] 338 / 2e-107 AT5G62620 961 / 0.0 Galactosyltransferase family protein (.1.2) Lus10036154 [exp] 327 / 2e-103 AT4G21060 963 / 0.0 Galactosyltransferase family protein (.1.2) Lus10037238 [exp] 323 / 9e-102 AT5G62620 881 / 0.0 Galactosyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G168500 [exp] 933 / 0 AT1G26810 857 / 0.0 galactosyltransferase1 (.1) Potri.008G086900 [exp] 906 / 0 AT1G26810 829 / 0.0 galactosyltransferase1 (.1) Potri.010G151600 [exp] 559 / 0 AT3G06440 702 / 0.0 Galactosyltransferase family protein (.1.2) Potri.012G072400 [exp] 353 / 5e-113 AT5G62620 905 / 0.0 Galactosyltransferase family protein (.1.2) Potri.006G011300 [exp] 349 / 8e-112 AT4G21060 1005 / 0.0 Galactosyltransferase family protein (.1.2) Potri.016G013300 [exp] 346 / 2e-110 AT4G21060 1000 / 0.0 Galactosyltransferase family protein (.1.2) Potri.015G067600 [exp] 336 / 8e-107 AT5G62620 920 / 0.0 Galactosyltransferase family protein (.1.2) Potri.010G040400 [exp] 317 / 1e-99 AT5G62620 858 / 0.0 Galactosyltransferase family protein (.1.2) Potri.006G228900 [exp] 82 / 2e-16 AT2G26100 452 / 1e-159 Galactosyltransferase family protein (.1) Potri.001G392700 [exp] 78 / 2e-15 AT1G53290 452 / 3e-160 Galactosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01762 [flax] [poplar] Galactosyl_T Galactosyltransferase CL0004 [flax] [poplar] Concanavalin PF00337 [flax] [poplar] Gal-bind_lectin Galactoside-binding lectin
Representative CDS sequence Show only first row Show all	>Lus10030467 pacid=23140723 polypeptide=Lus10030467 locus=Lus10030467.g ID=Lus10030467.BGIv1.0 annot-version=v1.0 ATGAAGAAATGGTATGGAGGATTACTGATTGCAGCCCTGTTTATGTTACTGATCCTGAGATATGGTCTCTTGAAGAATCCTATTGAAGAAGGTTATCTGG TAAACTCCTTACCGAATGCAACCAATCCTCTTCAATGGGTGCAGAGCACTTTGCCATCGGCTCTTCGAAGTCCACTGAATTCTTCTCAAGCAATCTCTAC AAACACCATAGTTGCTTTACCAAACGGATTGGATGCTATCAAGGAAGCGGTCAGTGCATGGAATAATCTGATGGCCACCGTCGAATTGGAGAAACTTAGT TATGCAAATGACAGCTCGAATCGGAAAGCTAAAGAAAAGCAATGTCCTCATTTCGTCAACAAACTGAACGCAACAGGGCTCGATAATGATGGTTTTAGAT TGCGACTGCCTTGTGGTTTAACCCAAGGATCTTCAGTCACAATAATCGGGATTCCGGAAGGTCTTCTTGGAAATTTTCGTATCGAGTTAACGGGCGAAAC ACTTCCAGGGGAGCCTGATCCACCTATAATATATCATTACAACGTGAGGCTAAACGGTGATAAGGTGACTGATGATCCGGTGATAGTTCAAAATACTTGG ACTGCAGCTCATGATTGGGGTGATGAGGAGCGCTGTCCACCTCTGTCTCCTGAGAAAATCAAGAAAGTGGATGAGTTGGACCAATGCAACAAGGTGGTTG GTAAAAATAGTTCTAAAAGTCACGATAATGGTCGAAGGAGGTCCGCAATGGTTCAGGATGGATTCAGATCCAGAACATATTTCCCATTCAAGCAAGGTTC TTTATCTGTTATGACACTAAGAGTTGGATCAGAGGGAATCCAGACAACGGTTGATGGAAAGCACATTACATCGTTCGCATACCGTGAAACTTTGGAGCCA TGGCTTGTTAGTGAAGTTAGGACTTCTGGAGACCTGAAGTTGATTTCTGTTCTGGCTAGTGGTCTTCCTACAGTTGAAGACTCGGAACACTCTGTAGATT TAGAAGCACTGAAAGCATCTCCTCTCCCTACGAACCGATCGTTGGATCTCTTTATTGGCGTCTTCTCCAACGCGAATAATTTCAAACGCAGGATGGCTGT TAGAAGGACATGGATGCAGCATGCTCCTGTACGTTCAGGAGCCGTTGCAGTTCGGTTTTTTGTTGGTTTGCATAAAAACCAAATAGTAAACGCCGAACTG TGGAACGAGGCCAGAACGTACGGTGACATACAACTGATGCCTTTTGTTGACTACTACAATCTTATCACTTGGAAAATCTTAGGCATCTGTGTATTTGGGA CACAAGTTGTATCGGCGAAGTATGTCATGAAGACGGATGATGATGCATTCGTTCGCGTGGACGAAGTCCTGTCTTCATTGAAGAACATCAATGTGAATCG AGGATTGCTTTACGGGCTTATCAACTCCGATTCTCGACCGCATCGAAATGCTGATAGCAAGTGGTTCATTAGCCATGAAGAATGGCGAGACGATAAATAT CCGCCATGGGCGCACGGTCCTGGTTATGTCATCTCTCAAGACATAGCAAAGTCAGTTTACAACAAATATAAGGAAGGTCGTTTGAAGATGTTTAAGCTTG AAGATGTAGCGATGGGAATCTGGATCAATGAAATGAAGAACGAAGGGATGAATGTCCGGTACGAGAAAGAAGAGAGGATCTGCAACACGGGATGCCGGGA TGGCTATGTTGTTGCTCACTACCAGAGTCCAAGAGATATGCTCTGTCTCTGGCAGAAGATCCAGCAAGGCAATGTTGCCAAATGCTGTGGCGACTGA
AA sequence Show only first row Show all	>Lus10030467 pacid=23140723 polypeptide=Lus10030467 locus=Lus10030467.g ID=Lus10030467.BGIv1.0 annot-version=v1.0 MKKWYGGLLIAALFMLLILRYGLLKNPIEEGYLVNSLPNATNPLQWVQSTLPSALRSPLNSSQAISTNTIVALPNGLDAIKEAVSAWNNLMATVELEKLS YANDSSNRKAKEKQCPHFVNKLNATGLDNDGFRLRLPCGLTQGSSVTIIGIPEGLLGNFRIELTGETLPGEPDPPIIYHYNVRLNGDKVTDDPVIVQNTW TAAHDWGDEERCPPLSPEKIKKVDELDQCNKVVGKNSSKSHDNGRRRSAMVQDGFRSRTYFPFKQGSLSVMTLRVGSEGIQTTVDGKHITSFAYRETLEP WLVSEVRTSGDLKLISVLASGLPTVEDSEHSVDLEALKASPLPTNRSLDLFIGVFSNANNFKRRMAVRRTWMQHAPVRSGAVAVRFFVGLHKNQIVNAEL WNEARTYGDIQLMPFVDYYNLITWKILGICVFGTQVVSAKYVMKTDDDAFVRVDEVLSSLKNINVNRGLLYGLINSDSRPHRNADSKWFISHEEWRDDKY PPWAHGPGYVISQDIAKSVYNKYKEGRLKMFKLEDVAMGIWINEMKNEGMNVRYEKEERICNTGCRDGYVVAHYQSPRDMLCLWQKIQQGNVAKCCGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26810		GALT1	galactosyltransferase1 (.1)		Lus10030467 [exp]	0	1
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031798 [exp]	3.2	0.7854
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10032761 [exp]	3.5	0.7813
AT5G50180			Protein kinase superfamily pro...		Lus10035233 [exp]	7.9	0.7467
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10021766 [exp]	9.6	0.7690
AT4G17250			unknown protein		Lus10004355 [exp]	12.4	0.7192
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10012885 [exp]	13.2	0.7660
AT4G12010			Disease resistance protein (TI...		Lus10016029 [exp]	13.5	0.7337
AT1G68030			RING/FYVE/PHD zinc finger supe...		Lus10011320 [exp]	14.7	0.7382
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Lus10005142 [exp]	15.5	0.7657
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Lus10037678 [exp]	15.9	0.7625

Compare expression of checked genes

Lus10030467 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.