Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02970 603 / 0 GDA1/CD39 nucleoside phosphatase family protein (.1) AT1G14230 484 / 1e-167 GDA1/CD39 nucleoside phosphatase family protein (.1) AT1G14250 480 / 3e-166 GDA1/CD39 nucleoside phosphatase family protein (.1) AT1G14240 458 / 8e-158 GDA1/CD39 nucleoside phosphatase family protein (.1.2.3.4) AT4G19180 145 / 7e-37 GDA1/CD39 nucleoside phosphatase family protein (.1) AT5G18280 135 / 9e-34 ATAPY2 apyrase 2 (.1.2) AT3G04080 131 / 5e-33 ATAPY1 apyrase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012825 [exp] 1025 / 0 AT2G02970 605 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10030471 [exp] 631 / 0 AT2G02970 391 / 1e-133 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10042528 [exp] 144 / 2e-36 AT5G18280 684 / 0.0 apyrase 2 (.1.2) Lus10037285 [exp] 144 / 4e-36 AT4G19180 871 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10033317 [exp] 143 / 4e-36 AT4G19180 886 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10006546 [exp] 140 / 5e-36 AT5G18280 647 / 0.0 apyrase 2 (.1.2) Lus10034777 [exp] 139 / 1e-34 AT4G19180 879 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10027686 [exp] 137 / 1e-34 AT4G19180 296 / 8e-92 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10039953 [exp] 133 / 1e-33 AT4G19180 267 / 1e-81 GDA1/CD39 nucleoside phosphatase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G086400 [exp] 665 / 0 AT2G02970 635 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.010G169100 [exp] 634 / 0 AT2G02970 606 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.009G157500 [exp] 347 / 2e-113 AT2G02970 330 / 9e-107 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.019G031200 [exp] 152 / 2e-40 AT3G04080 422 / 1e-144 apyrase 1 (.1) Potri.013G053500 [exp] 150 / 1e-39 AT5G18280 637 / 0.0 apyrase 2 (.1.2) Potri.004G236900 [exp] 147 / 1e-37 AT4G19180 840 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.019G031000 [exp] 144 / 1e-37 AT5G18280 617 / 0.0 apyrase 2 (.1.2) Potri.013G053700 [exp] 121 / 8e-31 AT5G18280 300 / 2e-98 apyrase 2 (.1.2) Potri.015G079900 [exp] 125 / 1e-30 AT4G19180 276 / 6e-84 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.004G195600 [exp] 115 / 2e-27 AT5G21140 325 / 2e-108 embryo defective 1379 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF01150 [flax] [poplar] GDA1_CD39 GDA1/CD39 (nucleoside phosphatase) family
Representative CDS sequence Show only first row Show all	>Lus10030470 pacid=23140564 polypeptide=Lus10030470 locus=Lus10030470.g ID=Lus10030470.BGIv1.0 annot-version=v1.0 ATGGATTCCGTCAAATACCCATCTCGATCCTCTAATCATTTCCCTTACCACCCGATCCCCCGACCCGCAAACCGATCCAAATCCAACCTCGTCGTTTTTG GGCTCGTTCTAATCTTGATTGCTTTGCTCTCCTGTTATTATCTATTCAGCACGGGGAAGGTCGTGGATTGGAATAAGAAATACAGAGTCTTCATCGACGG AGGTAGTACTGGTACTCGGATCCATGTTTTCTCTTACACGGTGGAGAATGGGAGTCCGGTGTTTGAATTCGGCGATAAGGATACGGCGATGAGGGTCAGT CCGGGATTGTCGGCATATTCCGATGATCCGGAATCGGGAGGGGATTCGCTGATCGAGCTGATTGAGTTTGCGAAGGAGAGAGTTCCGAGGGAGATGTGGA GGGAGACCGAAATTCGGTTGATGGCTACTGCTGGGATGAGGCTGCTGGAAGGTGATGTTCAAGGGAAGGTTATGGAAGGGTGTAGGAACGTTTTGAGGGA GTCTGGGTTCTTGTTTAGGGATGAATGGGCTTCGGTAATCAGTGGGTCTGATGAGGGTGTGTATGCTTGGGTTGTTGCGAATTACGCGCTGGGGACGCTT GGAGGTGATCCTGGCGAGACGACTGGTGTAATCGAGCTTGGAGGAGCTTCTGCTCAGGTGACTTTTGTGTCGAATGAGCCGATGCCTCCTGAATTCTCGC GGATTATCAAGTTTGGAAATGCAACATACAACATCTATAGCCACAGCTTTCTTCAGTTTGGTCAGAATGTTGCATTTGACACATTGAGGGAATCACTAAT CTCAACAGGCCATCGATCATCTGAAGAGTCTGCTGAGAAAGGATTAATTTTGGATCCTTGTACTCCTGCTGGATATTCAAATGTTTTGGCTGCGGAAAGT TCCTCGTCGGCTTCTTTCACTGAAAAGTGGGACCTTCTATCAAACCTTCAGCCAAAGGGCAACTTTTCCAAGTGCAGATCAGCTGCCTTAACACTGTTAC AGAAGGGAAAAGAGAAATGTGCCTACCAACGCTGTTCTATAGGATCAGCATTCATACCGAAGCTCAAGGGGAAGTTTTTGGCCACAGAGAATTTCTTCCA TACATCTAAGTTTTTTGGATTGAGTCCGAAAGCGTTCCTCTCTAAAAATCTGATGGAAGCTGGAGAACAATTTTGCGGAGAGGATTGGTCAAACTTGAAA AGGAAGCATGGATCACTGTCTCTCAAAGACGATGACTTGATGCGTTATTGCTTCTCTTCTGCTTATATTGTCGCCCTACTCCACGACACTCTCGGGATCG CTCTAGATGATGAACGGATTGGCTGCGGTAATCATGTCGGAAACGTCCCTCTCGATTGGGCAGTCGGAGCTTTCATCTTTCTGAGCACTTCTTCACATGA TACACAACAACACCAAAGCTGGATTTCCACCATCATTGGCGAAGATTCGCCTACATTGTTATCGTTAGTTGCCATAGCTGCAGTGTTCATGTTTGCAGCC TGGTCACTCTCGAAATGGAGAAAACCCCAATTGAAGACGATCTACGATCTGGAGAAAGGACGGTATATTGTCACTCGCGTGCGAAGAAGTTCATAG
AA sequence Show only first row Show all	>Lus10030470 pacid=23140564 polypeptide=Lus10030470 locus=Lus10030470.g ID=Lus10030470.BGIv1.0 annot-version=v1.0 MDSVKYPSRSSNHFPYHPIPRPANRSKSNLVVFGLVLILIALLSCYYLFSTGKVVDWNKKYRVFIDGGSTGTRIHVFSYTVENGSPVFEFGDKDTAMRVS PGLSAYSDDPESGGDSLIELIEFAKERVPREMWRETEIRLMATAGMRLLEGDVQGKVMEGCRNVLRESGFLFRDEWASVISGSDEGVYAWVVANYALGTL GGDPGETTGVIELGGASAQVTFVSNEPMPPEFSRIIKFGNATYNIYSHSFLQFGQNVAFDTLRESLISTGHRSSEESAEKGLILDPCTPAGYSNVLAAES SSSASFTEKWDLLSNLQPKGNFSKCRSAALTLLQKGKEKCAYQRCSIGSAFIPKLKGKFLATENFFHTSKFFGLSPKAFLSKNLMEAGEQFCGEDWSNLK RKHGSLSLKDDDLMRYCFSSAYIVALLHDTLGIALDDERIGCGNHVGNVPLDWAVGAFIFLSTSSHDTQQHQSWISTIIGEDSPTLLSLVAIAAVFMFAA WSLSKWRKPQLKTIYDLEKGRYIVTRVRRSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02970			GDA1/CD39 nucleoside phosphata...		Lus10030470 [exp]	0	1
AT2G02970			GDA1/CD39 nucleoside phosphata...		Lus10030471 [exp]	1.0	0.8975
AT2G28910		CXIP4	CAX interacting protein 4 (.1)		Lus10004961 [exp]	10.5	0.8127
AT1G79590		ATSYP52, SYP52	syntaxin of plants 52 (.1.2)		Lus10016577 [exp]	13.3	0.8032
AT2G02970			GDA1/CD39 nucleoside phosphata...		Lus10012825 [exp]	13.3	0.8352
AT3G15140			Polynucleotidyl transferase, r...		Lus10005381 [exp]	17.0	0.7827
AT2G36320			A20/AN1-like zinc finger famil...		Lus10035603 [exp]	20.8	0.7670
AT1G17030			unknown protein		Lus10024442 [exp]	22.6	0.7759
AT1G17455		ELF4-L4	ELF4-like 4 (.1.2)		Lus10000371 [exp]	24.7	0.7763
AT2G37550		ASP1, AGD7	yeast pde1 suppressor 1, ARF-G...		Lus10023766 [exp]	27.2	0.7658
AT5G57860			Ubiquitin-like superfamily pro...		Lus10036598 [exp]	28.0	0.7627

Compare expression of checked genes

Lus10030470 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.