Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02970 380 / 3e-129 GDA1/CD39 nucleoside phosphatase family protein (.1) AT1G14250 286 / 2e-93 GDA1/CD39 nucleoside phosphatase family protein (.1) AT1G14230 286 / 3e-93 GDA1/CD39 nucleoside phosphatase family protein (.1) AT1G14240 257 / 3e-82 GDA1/CD39 nucleoside phosphatase family protein (.1.2.3.4) AT4G19180 74 / 3e-14 GDA1/CD39 nucleoside phosphatase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030470 [exp] 630 / 0 AT2G02970 613 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10012825 [exp] 614 / 0 AT2G02970 605 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10033317 [exp] 73 / 6e-14 AT4G19180 886 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10037285 [exp] 71 / 2e-13 AT4G19180 871 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10034777 [exp] 69 / 1e-12 AT4G19180 879 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10035695 [exp] 69 / 1e-12 AT4G19180 660 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10003270 [exp] 46 / 2e-05 AT5G18280 558 / 0.0 apyrase 2 (.1.2) Lus10042528 [exp] 44 / 0.0002 AT5G18280 684 / 0.0 apyrase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G086400 [exp] 445 / 7e-155 AT2G02970 635 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.010G169100 [exp] 428 / 2e-148 AT2G02970 606 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.009G157500 [exp] 231 / 3e-71 AT2G02970 330 / 9e-107 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.004G195600 [exp] 88 / 4e-19 AT5G21140 325 / 2e-108 embryo defective 1379 (.1) Potri.004G236900 [exp] 71 / 2e-13 AT4G19180 840 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.013G053500 [exp] 54 / 5e-08 AT5G18280 637 / 0.0 apyrase 2 (.1.2) Potri.019G031000 [exp] 53 / 1e-07 AT5G18280 617 / 0.0 apyrase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF01150 [flax] [poplar] GDA1_CD39 GDA1/CD39 (nucleoside phosphatase) family
Representative CDS sequence Show only first row Show all	>Lus10030471 pacid=23140608 polypeptide=Lus10030471 locus=Lus10030471.g ID=Lus10030471.BGIv1.0 annot-version=v1.0 ATGAAGATTGGCGAGACGACTGGTGTAATCGAGCTTGGAGGAGCTTCTGCTCAGGTGACTTTTGTGTCGAATGAGCCGATGCCTCCTGAATTCTCGCGGA TTATCAAGTTTGGAAATGCAACATACAACATCTATAGCCACAGCTTTCTTCAGTTTGGTCAGAATGTTGCATTTGACACATTGAGGGAATCACTAATCTC AACAGGCCATCGATCATCTGAAGAGTCTGCTGAGAAAGGATTAATTTTGGATCCTTGTACTCCTGCTGGATATTCAAATGTTTTGGCTGCGGAAAGTTCC TCGTCGGCTTCTTTCACTGAAAAGTGGGACCTTCTATCAAACCTTCAGCCAAAGGGCAACTTTTCCAAGTGCAGATCAGCTGCCTTAACACTGTTACAGA AGGGAAAAGAGAAATGTGCCTACCAACGCTGTTCTATAGGATCAGCATTCATACCGAAGCTCAAGGGGAAGTTTTTGGCCACAGAGAATTTCTTCCATAC ATCTAAGTTTTTTGGATTGAGTCCGAAAGCGTTCCTCTCTAAAAATCTGATGGAAGCTGGAGAACAATTTTGCGGAGAGGATTGGTCAAACTTGAAAAGG AAGCATGGATCACTGTCTCTCAAAGACGATGACTTGATGCGTTATTGCTTCTCTTCTGCTTATATTGTCGCCCTACTCCACGACACTCTCGGGATCGCTC TAGATGATGAACGGATTGGCTGCGGTAATCATGTCGGAAACGTCCCTCTCGATTGGGCAGTCGGAGCTTTCATCTTTCTGAGCACTTCTTCACATGATAC ACAACAACACCAAAGCTGGATTTCCACCATCATTGGCGAAGATTCGCCTACATTGTTATCGTTAGTTGCCATAGCTGCAGTGTTCATGTTTGCAGCCTGG TCACTCTCGAAATGGAGAAAACCCCAATTGAAGACGATCTACGATCTGGAGAAAGGACGGTATATTGTCACTCGCGTGCGAAGAAGTTCATAG
AA sequence Show only first row Show all	>Lus10030471 pacid=23140608 polypeptide=Lus10030471 locus=Lus10030471.g ID=Lus10030471.BGIv1.0 annot-version=v1.0 MKIGETTGVIELGGASAQVTFVSNEPMPPEFSRIIKFGNATYNIYSHSFLQFGQNVAFDTLRESLISTGHRSSEESAEKGLILDPCTPAGYSNVLAAESS SSASFTEKWDLLSNLQPKGNFSKCRSAALTLLQKGKEKCAYQRCSIGSAFIPKLKGKFLATENFFHTSKFFGLSPKAFLSKNLMEAGEQFCGEDWSNLKR KHGSLSLKDDDLMRYCFSSAYIVALLHDTLGIALDDERIGCGNHVGNVPLDWAVGAFIFLSTSSHDTQQHQSWISTIIGEDSPTLLSLVAIAAVFMFAAW SLSKWRKPQLKTIYDLEKGRYIVTRVRRSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02970			GDA1/CD39 nucleoside phosphata...		Lus10030471 [exp]	0	1
AT2G02970			GDA1/CD39 nucleoside phosphata...		Lus10030470 [exp]	1.0	0.8975
AT3G59280		TXR1	THAXTOMIN A RESISTANT 1, Prote...		Lus10032532 [exp]	4.0	0.8293
AT3G15140			Polynucleotidyl transferase, r...		Lus10005381 [exp]	6.5	0.8139
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10027641 [exp]	7.1	0.8057
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10002733 [exp]	24.6	0.8124
AT1G79590		ATSYP52, SYP52	syntaxin of plants 52 (.1.2)		Lus10016577 [exp]	31.6	0.7736
AT2G28910		CXIP4	CAX interacting protein 4 (.1)		Lus10005458 [exp]	31.6	0.7932
AT5G13070			MSF1-like family protein (.1)		Lus10031832 [exp]	33.3	0.7814
AT2G28910		CXIP4	CAX interacting protein 4 (.1)		Lus10004961 [exp]	37.6	0.7722
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Lus10040091 [exp]	40.7	0.7830

Compare expression of checked genes

Lus10030471 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.