Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02960 217 / 3e-69 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) AT1G14260 189 / 1e-58 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT3G47550 181 / 4e-56 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) AT5G62460 179 / 4e-54 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G38070 120 / 2e-32 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G01275 120 / 4e-32 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT1G02610 96 / 2e-23 RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G02075 87 / 5e-20 PIT1 pitchoun 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G34100 57 / 1e-08 RING/U-box superfamily protein (.1.2) AT4G32670 55 / 3e-08 RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036754 [exp] 246 / 9e-81 AT2G02960 315 / 1e-108 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10037172 [exp] 245 / 3e-80 AT2G02960 303 / 5e-104 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10035010 [exp] 202 / 2e-63 AT3G47550 284 / 8e-96 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10021670 [exp] 201 / 9e-63 AT3G47550 275 / 7e-92 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10034454 [exp] 192 / 1e-59 AT3G47550 296 / 8e-101 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10019102 [exp] 191 / 4e-59 AT3G47550 295 / 5e-100 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10004058 [exp] 130 / 5e-36 AT2G01275 251 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10002282 [exp] 122 / 8e-33 AT5G38070 219 / 6e-71 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10034640 [exp] 121 / 4e-32 AT2G01275 202 / 3e-64 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G169200 [exp] 259 / 9e-86 AT3G47550 253 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Potri.008G086300 [exp] 248 / 2e-81 AT2G02960 252 / 9e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.008G127400 [exp] 148 / 7e-43 AT2G01275 266 / 1e-89 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.010G115600 [exp] 144 / 3e-41 AT2G01275 248 / 1e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.004G093500 [exp] 135 / 7e-38 AT2G01275 238 / 9e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.019G111700 [exp] 134 / 1e-37 AT2G02960 156 / 1e-46 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.013G126600 [exp] 130 / 6e-36 AT2G02960 159 / 9e-48 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.017G122300 [exp] 115 / 3e-30 AT2G01275 246 / 4e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.002G196600 [exp] 92 / 4e-22 AT1G02610 183 / 2e-58 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.014G121900 [exp] 92 / 6e-22 AT1G02610 181 / 2e-57 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0229 [flax] [poplar] PF12428 [flax] [poplar] DUF3675 Protein of unknown function (DUF3675)
Representative CDS sequence Show only first row Show all	>Lus10030472 pacid=23140709 polypeptide=Lus10030472 locus=Lus10030472.g ID=Lus10030472.BGIv1.0 annot-version=v1.0 ATGAGCGATCACGTGGTCCTTTTGGTGGACCGCCTTGTTTCTCAGCCTCCTCCGGCGGCGGCGGCGAAAGATGGTAATAAAATTGGGGGAATCGGCATCG ACGATGTGGGTCCGTCGTGTTCCAGGTCGAATGAGGAGGAATCGGACGAAGATGAGCCTTTGTTGATGATTGAAGATGGGGAATGTCGAATTTGTCAGGA GGAGGATTCCGTTGAGAATCTGGAATCTCCTTGCGGCTGCAGCGGTAGCCTCAAGTATGCTCATAGGAAATGTGTGCAGCATTGGTGCAATGAGAAAGGA GACACCATTTGTGAGATATGCCATCAGCCTTATGAACCAGGATACACTGCTCCGCCTCGTCCAGCTCTCCCCGAAGACACTGTCATCGACATCGGTGGCG GTTGGACAATATCGGGCACCCCAATAGACTTGCGAGATCCTCGTCTCCTGGCAATTGCTGATGCAGAACGCCATTTCCTGGAAGCTGAGTATGATGAGTA TACTGCCTCGAATGCCAGCGGAGCTGCATTCTGCCGTTCTGCTGCTCTCATTTTGATGGCTCTTCTGCTGTTGAGACATGCTTTGACTGTTACGGAAGCC GATGCAGATGATGATGTTTCTGCCTTCTTCTCTCTATGGAAAGTGGCCACATCCTCGCCGGAGGAGTCTGTAACTTCTCTTCCTGCTACGAGCAGCCGGA TTCCTCCTTCCATGCTACATTATGGCTTGGGCTATCAGCATCTTGCAACGCAGAAGGCAAAGACAGGAAGCTGCAGCAATGGCAGCTACGCAGGTGGCGT TCGTCCTGCAATCTGGGCCGCGTCGAGGCCTGCAATTCACAATTGCGTCTGGTCTGCCGTCTCCTGTTACTACTACGCACCAAGAACCTGTTTGATCGAG TATCGACCAGCAAGCAAGGGAAGCATGAAGGTTGAAGAACTTTAA
AA sequence Show only first row Show all	>Lus10030472 pacid=23140709 polypeptide=Lus10030472 locus=Lus10030472.g ID=Lus10030472.BGIv1.0 annot-version=v1.0 MSDHVVLLVDRLVSQPPPAAAAKDGNKIGGIGIDDVGPSCSRSNEEESDEDEPLLMIEDGECRICQEEDSVENLESPCGCSGSLKYAHRKCVQHWCNEKG DTICEICHQPYEPGYTAPPRPALPEDTVIDIGGGWTISGTPIDLRDPRLLAIADAERHFLEAEYDEYTASNASGAAFCRSAALILMALLLLRHALTVTEA DADDDVSAFFSLWKVATSSPEESVTSLPATSSRIPPSMLHYGLGYQHLATQKAKTGSCSNGSYAGGVRPAIWAASRPAIHNCVWSAVSCYYYAPRTCLIE YRPASKGSMKVEEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10030472 [exp]	0	1
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10037083 [exp]	1.7	0.8396
					Lus10028245 [exp]	2.4	0.8225
AT5G03795			Exostosin family protein (.1)		Lus10039142 [exp]	5.6	0.7744
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10019014 [exp]	6.2	0.8007
AT1G09970		RLK7, LRRXI-23 ...	receptor-like kinase 7, Leucin...		Lus10012462 [exp]	8.2	0.7511
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10024061 [exp]	10.7	0.8682
					Lus10008157 [exp]	11.2	0.7834
AT5G57580			Calmodulin-binding protein (.1...		Lus10011248 [exp]	11.8	0.7939
					Lus10008659 [exp]	16.1	0.8183
AT2G39650			Protein of unknown function (D...		Lus10040293 [exp]	18.3	0.7918

Compare expression of checked genes

Lus10030472 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.