Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39760 62 / 4e-12 ZF_HD ATHB23, ZHD10 ZINC FINGER HOMEODOMAIN 10, homeobox protein 23 (.1) AT1G75240 61 / 2e-11 ZF_HD ATHB33, ZHD5 zinc-finger homeodomain 5, homeobox protein 33 (.1) AT3G50890 60 / 2e-11 ZF_HD ATHB28, ZHD7 ZINC FINGER HOMEODOMAIN 7, homeobox protein 28 (.1) AT2G02540 60 / 2e-11 ZF_HD ATHB21, ZFHD4, ZHD3 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) AT3G28920 60 / 3e-11 ZF_HD ATHB34, ZHD9 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) AT4G24660 58 / 5e-11 ZF_HD ATHB22, MEE68, ZHD2 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) AT1G14440 58 / 8e-11 ZF_HD ATHB31, ZHD4 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) AT5G15210 58 / 1e-10 ZF_HD ATHB30, ZFHD3, ZHD8 ZINC FINGER HOMEODOMAIN 8, ZINC FINGER HOMEODOMAIN 3, homeobox protein 30 (.1) AT2G18350 55 / 9e-10 ZF_HD ATHB24, ZHD6 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) AT1G69600 55 / 1e-09 ZF_HD ATHB29, ZFHD1, ZHD11 ZINC FINGER HOMEODOMAIN 11, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 29, zinc finger homeodomain 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012827 [exp] 170 / 1e-54 AT3G28920 91 / 6e-22 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) Lus10037175 [exp] 95 / 3e-25 AT1G75240 86 / 2e-20 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10034503 [exp] 63 / 9e-14 AT3G28920 62 / 9e-13 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) Lus10014302 [exp] 65 / 3e-13 AT1G75240 176 / 9e-54 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10026010 [exp] 64 / 5e-13 AT1G75240 172 / 2e-52 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10007147 [exp] 61 / 9e-12 AT2G18350 222 / 1e-70 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) Lus10010693 [exp] 57 / 3e-11 AT2G02540 104 / 7e-28 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10038135 [exp] 59 / 5e-11 AT2G02540 223 / 7e-71 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10031885 [exp] 56 / 6e-11 AT1G75240 71 / 4e-16 zinc-finger homeodomain 5, homeobox protein 33 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G169400 [exp] 80 / 2e-18 AT1G69600 152 / 2e-44 ZINC FINGER HOMEODOMAIN 11, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 29, zinc finger homeodomain 1 (.1) Potri.008G086000 [exp] 71 / 3e-15 AT5G15210 167 / 8e-50 ZINC FINGER HOMEODOMAIN 8, ZINC FINGER HOMEODOMAIN 3, homeobox protein 30 (.1) Potri.012G040900 [exp] 66 / 6e-14 AT4G24660 143 / 4e-43 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.015G032700 [exp] 64 / 4e-13 AT1G69600 137 / 2e-40 ZINC FINGER HOMEODOMAIN 11, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 29, zinc finger homeodomain 1 (.1) Potri.004G229600 [exp] 62 / 4e-12 AT1G14440 244 / 1e-79 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) Potri.007G024100 [exp] 62 / 5e-12 AT1G75240 186 / 2e-56 zinc-finger homeodomain 5, homeobox protein 33 (.1) Potri.005G122500 [exp] 61 / 8e-12 AT2G18350 179 / 2e-54 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) Potri.004G126500 [exp] 61 / 9e-12 AT3G28920 218 / 5e-69 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) Potri.017G082900 [exp] 61 / 1e-11 AT3G28920 215 / 8e-68 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) Potri.005G227900 [exp] 60 / 3e-11 AT2G18350 171 / 4e-52 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030473 pacid=23140788 polypeptide=Lus10030473 locus=Lus10030473.g ID=Lus10030473.BGIv1.0 annot-version=v1.0 ATGCACGATTTCGCGGAGAGATTGGGGTGGAAGATGCTGAGGGGCAACGAGGACAAGATCGTCGAAGATTTCTGCGCCGGAATTGGAGTCCGCCGCAACG TCTTCAAAGTCTGGATGCATAACAACAAGCACAGGAAGGACAAGGCTGCCGGTAACGGTAACACTAACGGTAACGGCGACGATGGAGGACGTTTCGCTAA CGGCGGTAACGGCGACGACGGAGGACGTTTCACTAACGGCGGTAACGGCGGCGGAGAAGATGATGATGATGAAGATGAAGATGATAAGGTGAAGAATGTG AAGTACGATCTGAATAATAGCAGTAGCGGTGGTAACAGTACTAGGGTTAGGTTCGATACTGATGTATTCGAGAGCAAAGTTCATGTCCTCGGCCACCATG GCGGATCTTCGCCATAG
AA sequence Show only first row Show all	>Lus10030473 pacid=23140788 polypeptide=Lus10030473 locus=Lus10030473.g ID=Lus10030473.BGIv1.0 annot-version=v1.0 MHDFAERLGWKMLRGNEDKIVEDFCAGIGVRRNVFKVWMHNNKHRKDKAAGNGNTNGNGDDGGRFANGGNGDDGGRFTNGGNGGGEDDDDEDEDDKVKNV KYDLNNSSSGGNSTRVRFDTDVFESKVHVLGHHGGSSP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39760	ZF_HD	ATHB23, ZHD10	ZINC FINGER HOMEODOMAIN 10, ho...		Lus10030473 [exp]	0	1
AT3G28920	ZF_HD	ATHB34, ZHD9	ZINC FINGER HOMEODOMAIN 9, hom...		Lus10012827 [exp]	1.7	0.9656
AT2G18350	ZF_HD	ATHB24, ZHD6	ZINC FINGER HOMEODOMAIN 6, hom...		Lus10007147 [exp]	2.2	0.9754
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10026036 [exp]	3.7	0.9547
AT5G26330			Cupredoxin superfamily protein...		Lus10010533 [exp]	4.0	0.9573
AT1G23220			Dynein light chain type 1 fami...		Lus10021793 [exp]	5.1	0.9498
AT5G15210	ZF_HD	ATHB30, ZFHD3, ...	ZINC FINGER HOMEODOMAIN 8, ZIN...		Lus10036753 [exp]	5.2	0.9491
AT2G24440			selenium binding (.1)		Lus10026958 [exp]	7.5	0.9584
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10003141 [exp]	9.8	0.9649
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10010693 [exp]	9.8	0.9665
AT2G45480	GRF	ATGRF9	growth-regulating factor 9 (.1...		Lus10038002 [exp]	14.7	0.9621

Compare expression of checked genes

Lus10030473 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.