Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02955 78 / 1e-15 MEE12 maternal effect embryo arrest 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021646 [exp] 196 / 3e-57 AT2G02955 442 / 4e-147 maternal effect embryo arrest 12 (.1) Lus10012828 [exp] 149 / 3e-44 AT2G02955 68 / 8e-14 maternal effect embryo arrest 12 (.1) Lus10016253 [exp] 114 / 1e-31 AT2G02955 63 / 8e-13 maternal effect embryo arrest 12 (.1) Lus10034719 [exp] 123 / 2e-31 AT2G02955 370 / 5e-121 maternal effect embryo arrest 12 (.1) Lus10004454 [exp] 100 / 6e-24 AT2G02955 204 / 8e-60 maternal effect embryo arrest 12 (.1) Lus10016252 [exp] 64 / 1e-11 AT2G02955 148 / 2e-41 maternal effect embryo arrest 12 (.1) Lus10034720 [exp] 0 / 1 AT2G02955 39 / 1e-04 maternal effect embryo arrest 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G169500 [exp] 128 / 8e-33 AT2G02955 513 / 5e-174 maternal effect embryo arrest 12 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030476 pacid=23140544 polypeptide=Lus10030476 locus=Lus10030476.g ID=Lus10030476.BGIv1.0 annot-version=v1.0 ATGGTCACCGGAACCGCCGACGAGGACTTCACCGCCGGCGGCGCCTACAGCTCTATAGGTCTCCGTCGAAAACAGCGGACATCGCTCTCTCAGGGCACAG AAGCCAACCGTTCTTCCCAATATTGGTATCGGATCAAGCAGGAGGACGATGACCTGAATCGCCCGACGGAGCCGGCGGATTTGAGCGCGGCGGCGACCGG GAAGCTAGAGGATGAAGATTACTACAACGAGGTTAGAATAAGGTATGTTGTGGGCCTTCAGTGGATGTTTCAGATGCAGTGTGAGGCGTTGATGGAGAAG TTCGGTGCTAGCCCTTTGATTGTTGGAGTAGCGTCGAAACTTTGGATGAGGTTCGTCGCTGTAACTGGTCTGTTTAAAGATAACTGGGCTGATGCCACTG TGCTGGAACCCGAATCGCAAATCCTTGAAGGTATTTGGATTCTTTTGTTTCAGGCCTCGCAGCCTGAACCGATCCAGAAGTTGGAAGCAATGGCTGCTGT TATAGCCGAGTCAGTAGGTTTGAAATTGCTTGAGGTGAACTTCCACGCAAAAGCATCTCGGTATCTCGATGAACTCGATTCAAATTCTCTATTAGTTGCA TGGTTTCGGTGCGTGGGAATGAGTTTATCGAACAGTGCATCGAGCCAGACGACAGAGCTTGATTCCGGGAAACTTCTGCACCAACTTGACCCAGGATATA GGGAGATTGGAGAACCATGTGAGTTTGCTAAAGACTTGCCATCGTATCTCCAGAACTGCAAGGACGTGGTATTTGCAAGAAGCGAGTCGTCTTCGCAGAA AGCTCGGTCCGAAGTCGAAAAAAAAGAAGAAAAATTTATAGAGAAGCTGTGGGGTTATTATCAGAGCTCAGAGGTAAATGATTCTCCAGATGTCACATTG AACCGAAAACGATTAAGGAGGGGACAAAATCACACCCTATCTCGGTCAGGATCATGCAATCCGAGATACGAAGAATGA
AA sequence Show only first row Show all	>Lus10030476 pacid=23140544 polypeptide=Lus10030476 locus=Lus10030476.g ID=Lus10030476.BGIv1.0 annot-version=v1.0 MVTGTADEDFTAGGAYSSIGLRRKQRTSLSQGTEANRSSQYWYRIKQEDDDLNRPTEPADLSAAATGKLEDEDYYNEVRIRYVVGLQWMFQMQCEALMEK FGASPLIVGVASKLWMRFVAVTGLFKDNWADATVLEPESQILEGIWILLFQASQPEPIQKLEAMAAVIAESVGLKLLEVNFHAKASRYLDELDSNSLLVA WFRCVGMSLSNSASSQTTELDSGKLLHQLDPGYREIGEPCEFAKDLPSYLQNCKDVVFARSESSSQKARSEVEKKEEKFIEKLWGYYQSSEVNDSPDVTL NRKRLRRGQNHTLSRSGSCNPRYEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02955		MEE12	maternal effect embryo arrest ...		Lus10030476 [exp]	0	1
AT5G41460			Protein of unknown function (D...		Lus10028768 [exp]	2.8	0.8646
AT4G23490			Protein of unknown function (D...		Lus10028769 [exp]	10.5	0.8231
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Lus10034315 [exp]	13.8	0.8240
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10002854 [exp]	26.4	0.8061
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10010942 [exp]	26.5	0.7636
AT1G02335		GL22	germin-like protein subfamily ...		Lus10004857 [exp]	27.3	0.7474
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Lus10037294 [exp]	28.1	0.7737
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10012225 [exp]	28.7	0.8060
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10017124 [exp]	28.8	0.7676
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10023625 [exp]	28.8	0.7833

Compare expression of checked genes

Lus10030476 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.