Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39820 296 / 1e-97 NAC ANAC094 NAC domain containing protein 94 (.1) AT1G26870 293 / 1e-95 NAC FEZ, ANAC009 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT2G43000 234 / 1e-74 NAC ANAC042, JUB1, JUNGBRUNNEN1 NAC domain containing protein 42 (.1) AT3G12910 206 / 4e-63 NAC NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G15510 201 / 8e-61 NAC ATNAC2, ANAC056, NARS1 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) AT1G61110 197 / 1e-59 NAC ANAC025 NAC domain containing protein 25 (.1) AT2G02450 194 / 1e-57 NAC LOV1, ANAC034, ANAC035 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) AT3G04070 191 / 4e-57 NAC ANAC047 NAC domain containing protein 47 (.1.2) AT1G69490 189 / 4e-57 NAC NAP, ANAC029, ATNAP Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) AT5G63790 187 / 6e-56 NAC ANAC102 NAC domain containing protein 102 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037178 [exp] 402 / 3e-137 AT5G39820 306 / 3e-101 NAC domain containing protein 94 (.1) Lus10036749 [exp] 396 / 4e-135 AT1G26870 306 / 4e-100 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10015367 [exp] 300 / 3e-99 AT1G26870 298 / 8e-99 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10007263 [exp] 297 / 8e-98 AT5G39820 300 / 3e-100 NAC domain containing protein 94 (.1) Lus10031189 [exp] 238 / 1e-74 AT3G12910 264 / 9e-87 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10031767 [exp] 225 / 7e-72 AT2G43000 236 / 3e-78 NAC domain containing protein 42 (.1) Lus10030446 [exp] 206 / 2e-63 AT1G69490 302 / 2e-103 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Lus10011215 [exp] 202 / 5e-61 AT1G61110 305 / 1e-102 NAC domain containing protein 25 (.1) Lus10038332 [exp] 199 / 7e-61 AT2G43000 231 / 1e-75 NAC domain containing protein 42 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G082000 [exp] 313 / 1e-103 AT1G26870 299 / 3e-98 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.004G126901 [exp] 310 / 2e-102 AT5G39820 305 / 1e-101 NAC domain containing protein 94 (.1) Potri.007G066300 [exp] 240 / 2e-76 AT3G12910 269 / 2e-89 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.002G057200 [exp] 236 / 4e-75 AT2G43000 282 / 4e-95 NAC domain containing protein 42 (.1) Potri.005G098000 [exp] 235 / 2e-74 AT3G12910 271 / 2e-90 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.001G080900 [exp] 233 / 5e-74 AT2G43000 257 / 3e-85 NAC domain containing protein 42 (.1) Potri.005G205400 [exp] 233 / 9e-74 AT2G43000 269 / 6e-90 NAC domain containing protein 42 (.1) Potri.003G149700 [exp] 228 / 1e-71 AT2G43000 245 / 2e-80 NAC domain containing protein 42 (.1) Potri.004G038000 [exp] 208 / 1e-63 AT1G61110 332 / 3e-113 NAC domain containing protein 25 (.1) Potri.011G046700 [exp] 205 / 3e-62 AT1G61110 331 / 8e-113 NAC domain containing protein 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10030478 pacid=23140606 polypeptide=Lus10030478 locus=Lus10030478.g ID=Lus10030478.BGIv1.0 annot-version=v1.0 ATGGAGGGTGAGAGTAGTTGTAGTACCAACCTTAATATGGATCAAGAAGTGATGCTTCCGGGGTTCAGGTTCCATCCGACCGACGAAGAGCTTGTTGGGT TTTATCTCAAGAGGAAGATCCATCAACGACCTCTCTCGATCGAGCTCATTAAGCATGTTGACATCTACAAGTACGATCCTTGGGACCTTCCAAAAATGAC GGCGACCGGAGAGAAAGAGTGGTACTTTTTCTGCCCGAGGGACAGGAAGTACAGGAACAGCGCGAGGCCAAACAGGGTGACCGGAGCCGGGTTTTGGAAG GCGACGGGGACTGACCGGCCGATCTATTCGTCGGAAGGGAACAAATGCATTGGGCTGAAGAAGTCTCTAGTGTTCTACAAAGGAAGAGCCACCAAAGGGA TGAAGACTGACTGGATGATGCACGAGTTCCGGCTGCCGTCTCTCTCCGACAACCACCGTCCTCCGGCCGCCACCTCTAACCGTGCCGCCGACAGAACCAT ACCTGCCAACGATGCATGGGCGATATGCAGGATATTCAAGAAGACGAGCTCCACCGTCCAAAGAGCAATCTCTCAATCGTGGGTACTTCCTAACTCAACC ATTTCACCTCACGATCAAGTCCTCTCAAGAGCAAGTGGTAACTTTTTCCATCCTTCACATTTGAGCCCAAATAAAATTTCTACTACAACTTCATTAGCAC CACCAATTCATCAGCCATGCCACTTTAACTACAACAACAACAACAATGATACTTATCTAGACCAAACCCACCAATCCAACAACAACTTTTGCTCTTTCAA CAAACCAAACAAGCCTGATTCCTTCCAAAATCTACACAACAACTACCCTTTGAACATTGAAACTAATCATAGCTTCCCATCATCATCACTCTCACCTTTC TACCATCTAAACATGCCATCCTCATCACCTCCATCGATGTTGCTTGGCGATTTCGAGCAACTGCAAGGCCGTGATCACGAGAGCATAGGTAGCACCGGTC CATATCAGCTTAGTGGTGCCTCCCAGCGTAGCAATGGTGGAGGTGGGTTAATGTCCACGCCGATACAAGTAGGAGGTATGCATGACGACCAAACTGTTGC AAACACGATGGTGAAGAGTGCGGATCTCGCGCATGTTGATGCCCTTTCGTTGGACGGCTTGGGTGATATCACAAGCCCTACTACATGGAAGCAAAACTTG TTGCTTTGGGATTACCTCAATTCTGCCGCATCACCATGTCCTAGTGATCATGTCACCAGTGCCTTTTCCATGACTAAGTGCTATAGCTAG
AA sequence Show only first row Show all	>Lus10030478 pacid=23140606 polypeptide=Lus10030478 locus=Lus10030478.g ID=Lus10030478.BGIv1.0 annot-version=v1.0 MEGESSCSTNLNMDQEVMLPGFRFHPTDEELVGFYLKRKIHQRPLSIELIKHVDIYKYDPWDLPKMTATGEKEWYFFCPRDRKYRNSARPNRVTGAGFWK ATGTDRPIYSSEGNKCIGLKKSLVFYKGRATKGMKTDWMMHEFRLPSLSDNHRPPAATSNRAADRTIPANDAWAICRIFKKTSSTVQRAISQSWVLPNST ISPHDQVLSRASGNFFHPSHLSPNKISTTTSLAPPIHQPCHFNYNNNNNDTYLDQTHQSNNNFCSFNKPNKPDSFQNLHNNYPLNIETNHSFPSSSLSPF YHLNMPSSSPPSMLLGDFEQLQGRDHESIGSTGPYQLSGASQRSNGGGGLMSTPIQVGGMHDDQTVANTMVKSADLAHVDALSLDGLGDITSPTTWKQNL LLWDYLNSAASPCPSDHVTSAFSMTKCYS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Lus10030478 [exp]	0	1
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Lus10031285 [exp]	1.0	0.9472
AT3G20840	AP2_ERF	PLT1	PLETHORA 1, Integrase-type DNA...		Lus10031831 [exp]	2.0	0.9361
AT5G19730			Pectin lyase-like superfamily ...		Lus10012942 [exp]	3.9	0.9345
AT2G41810			Protein of unknown function, D...		Lus10031067 [exp]	5.3	0.9217
AT3G10120			unknown protein		Lus10027167 [exp]	7.2	0.9311
AT1G51190	AP2_ERF	PLT2	PLETHORA 2, Integrase-type DNA...		Lus10031260 [exp]	8.1	0.9260
AT3G07620			Exostosin family protein (.1)		Lus10008751 [exp]	9.4	0.9111
AT2G12646			PLATZ transcription factor fam...		Lus10039989 [exp]	9.8	0.9188
AT3G04710		TPR10	tetratricopeptide repeat 10, a...		Lus10003260 [exp]	10.8	0.9051
AT2G12646			PLATZ transcription factor fam...		Lus10008814 [exp]	16.4	0.9232

Compare expression of checked genes

Lus10030478 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.