Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26850 1021 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G18030 855 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G10440 695 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G33170 682 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G00750 658 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G45750 644 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G43200 559 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G31850 492 / 5e-168 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G19120 481 / 9e-164 ERD3 early-responsive to dehydration 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G00740 471 / 4e-160 QUA3 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012830 [exp] 1213 / 0 AT1G26850 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10037180 [exp] 1127 / 0 AT1G26850 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10036747 [exp] 1117 / 0 AT1G26850 1042 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10039385 [exp] 930 / 0 AT1G26850 936 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10003014 [exp] 878 / 0 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10011045 [exp] 874 / 0 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10008619 [exp] 712 / 0 AT1G26850 727 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10042197 [exp] 706 / 0 AT1G26850 706 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10006626 [exp] 696 / 0 AT1G26850 702 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G147800 [exp] 1054 / 0 AT1G26850 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.010G094100 [exp] 1032 / 0 AT1G26850 1031 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.012G069000 [exp] 931 / 0 AT1G26850 980 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.003G087600 [exp] 915 / 0 AT4G18030 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G146400 [exp] 899 / 0 AT4G18030 1008 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G454300 [exp] 704 / 0 AT1G33170 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.011G147600 [exp] 702 / 0 AT1G33170 984 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G137300 [exp] 676 / 0 AT4G00750 874 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G139000 [exp] 665 / 0 AT2G45750 880 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.014G075700 [exp] 654 / 0 AT4G00750 955 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10030479 pacid=23140759 polypeptide=Lus10030479 locus=Lus10030479.g ID=Lus10030479.BGIv1.0 annot-version=v1.0 ATGGCGATAAAGAGTAATCCAGGTGATAACAGAACCAGAAGTTCAATCCAGATATTCATAGTAGCTGGATTGTGCTGTTTCTTCTACATATTGGGAGCAT GGCAGAAGAGTGGGTTTGGGAAAGCAGACAATCTAGCCATGACCATCACTAAGAACACTGCTGACTGCAACATCATCCCTAGTCTCAATTTCGAGACTCA CCACAGTGGTTCATCATCGATCGGGGAGTCCAATTCTGAGAAGAAAGTGTTCGAGCCTTGCAGTTCGAAGTACACCGACTACACGCCCTGCCAGGATCAG AGGCGCGCCATGACTTTCCCTAGGGAGAACATGAACTATAGGGAGAGGCATTGTCCCCTTGAGGAAGAGAAGTTGCATTGTCTGATCCCGGCTCCAAAAG GTTATGTTACTCCGTTTTCGTGGCCTAAGAGTCGTGATTATGTCCCCTATGCGAATGCTCCTTACAAGAGCTTGACGGTTGAGAAGGCTATTCAGAATTG GGTTCAGTATGAAGGTAATGTGTTTAGGTTCCCTGGTGGTGGTACTCAGTTTCCACAAGGTGCTGATAAGTACATTGATCAGTTGGCTTCGGTTATACCA ATTAAGAATGGCACGGTCAGGACTGCACTGGATACCGGCTGTGGGGTTGCGAGTTTAGGTGCGTATCTATGGAGCAGAAATGTTATTGCCATGTCATTTG CGCCTCGAGACTCACACGAAGCGCAAGTTCAGTTTGCTCTCGAGAGAGGTGTACCGGCTGTGATCGGAGTTCTTGGTACCATTAAGTTGCCTTATCCATC CAGAGCTTTCGACATGGCTCATTGTTCTCGTTGTTTGATTCCGTGGGGTGCCAATGATGGGAAGTACCTAATGGAAGTTGACCGAGTTCTCAGACCGGGT GGCTACTGGGTTCTTTCTGGCCCTCCGATCCATTGGAAGGTTAACTACAAGGCATGGCAGCGTCCCAAGGAAGAACTCCAGGAAGAGCAGAGAAGCATTG AAGAGACAGCAAAATTGCTTTGCTGGGACAAGAAGTACGAGAAGGGTGAAATCGCCATTTGGCAGAAGAGAATGGACGGCAAATCATGTCATAACAAACA AGACAAATCTCAAGTTAACTTGTGCGAATCTTCTGATCCTGATGATGTCTGGTACCAGAAAATGGAGGCTTGTGTCACGCCTTATCCCGATACCAGCACT TCGGGACTCAAGAACTTCCCCGAAAGACTTTATGCTGTGCCGCCAAGAGTTGCGAGTGGCTCTATCCCAGGAGTTTCGATCGAGAAATACCTAGAGGACA GCAACAAATGGAAAACCCATGTCAAGGCTTATAAAAGAATCAACAGGCTTCTGGACTCTGGAAGGTACAGGAACATAATGGATATGAATGCTGGCTTGGG AGGGTTCGCTGCTGCACTTCAGTCTCCGAAATTGTGGGTTATGAATGTCGTCCCAACCATAGCTGAGAGGAGTACTTTGGGCGCTGTTTACGAACGAGGA ATGATCGGAATCTATCATGACTGGTGTGAAGCTTTCTCCACTTACCCAAGGTCATATGACTTGATTCATGCCAATGGTCTTTTCAGTCTATACAACAACA AGTGCAATCTGGATGACATCCTGTTGGAGATGGACAGGATCCTGCGACCGGAAGGAGCAGTTATCATCAGGGACGAAGTAGACGTGCTGATCAAGGTGAA GACGATAATCGGAGGAATGAGATGGGACACGAAAATGGTGGACCATGAAGATGGTCCTCTAGTTCCAGAGAAGATACTTGTTGCTGTCAAGCAGTACTGG GTTGGCAACTCCACATCAGCTCAGTGA
AA sequence Show only first row Show all	>Lus10030479 pacid=23140759 polypeptide=Lus10030479 locus=Lus10030479.g ID=Lus10030479.BGIv1.0 annot-version=v1.0 MAIKSNPGDNRTRSSIQIFIVAGLCCFFYILGAWQKSGFGKADNLAMTITKNTADCNIIPSLNFETHHSGSSSIGESNSEKKVFEPCSSKYTDYTPCQDQ RRAMTFPRENMNYRERHCPLEEEKLHCLIPAPKGYVTPFSWPKSRDYVPYANAPYKSLTVEKAIQNWVQYEGNVFRFPGGGTQFPQGADKYIDQLASVIP IKNGTVRTALDTGCGVASLGAYLWSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWGANDGKYLMEVDRVLRPG GYWVLSGPPIHWKVNYKAWQRPKEELQEEQRSIEETAKLLCWDKKYEKGEIAIWQKRMDGKSCHNKQDKSQVNLCESSDPDDVWYQKMEACVTPYPDTST SGLKNFPERLYAVPPRVASGSIPGVSIEKYLEDSNKWKTHVKAYKRINRLLDSGRYRNIMDMNAGLGGFAAALQSPKLWVMNVVPTIAERSTLGAVYERG MIGIYHDWCEAFSTYPRSYDLIHANGLFSLYNNKCNLDDILLEMDRILRPEGAVIIRDEVDVLIKVKTIIGGMRWDTKMVDHEDGPLVPEKILVAVKQYW VGNSTSAQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10030479 [exp]	0	1
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10012830 [exp]	1.0	0.9523
AT3G46520		ACT12	actin-12 (.1)		Lus10016259 [exp]	2.8	0.9016
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Lus10006546 [exp]	3.5	0.9234
AT5G66060			2-oxoglutarate (2OG) and Fe(II...		Lus10028404 [exp]	7.5	0.8877
AT5G10840			Endomembrane protein 70 protei...		Lus10042415 [exp]	7.9	0.9113
AT1G34550		EMB2756	EMBRYO DEFECTIVE 2756, Protein...		Lus10028702 [exp]	8.1	0.8970
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10039053 [exp]	10.4	0.8869
AT5G42090			Lung seven transmembrane recep...		Lus10033235 [exp]	11.0	0.8979
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10018954 [exp]	12.0	0.8728
AT1G14020			O-fucosyltransferase family pr...		Lus10030437 [exp]	12.6	0.8618

Compare expression of checked genes

Lus10030479 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.