Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11400 396 / 9e-140 ATEIF3G1, EIF3G1 eukaryotic translation initiation factor 3G1 (.1.2) AT5G06000 332 / 4e-114 ATEIF3G2, EIF3G2 ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITIATION FACTOR 3G2, eukaryotic translation initiation factor 3G2 (.1) AT4G34110 66 / 8e-12 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT3G23830 60 / 5e-11 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT3G08000 59 / 1e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G49760 62 / 2e-10 PABP8, PAB8 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) AT3G14100 62 / 2e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G54080 61 / 3e-10 UBP1A oligouridylate-binding protein 1A (.1.2) AT2G23350 61 / 4e-10 PABP4, PAB4 poly(A) binding protein 4 (.1) AT5G54580 58 / 4e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028823 [exp] 473 / 4e-170 AT3G11400 459 / 9e-165 eukaryotic translation initiation factor 3G1 (.1.2) Lus10017459 [exp] 461 / 3e-165 AT3G11400 447 / 3e-160 eukaryotic translation initiation factor 3G1 (.1.2) Lus10012833 [exp] 369 / 2e-129 AT3G11400 345 / 3e-120 eukaryotic translation initiation factor 3G1 (.1.2) Lus10023758 [exp] 65 / 2e-12 AT2G37510 164 / 9e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10014802 [exp] 67 / 3e-12 AT5G54580 176 / 2e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10003980 [exp] 63 / 6e-12 AT2G37510 169 / 1e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10003593 [exp] 66 / 7e-12 AT5G54580 174 / 6e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10010370 [exp] 64 / 3e-11 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10014565 [exp] 62 / 3e-11 AT1G13690 277 / 9e-97 ATPase E1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G060000 [exp] 433 / 2e-154 AT3G11400 422 / 5e-150 eukaryotic translation initiation factor 3G1 (.1.2) Potri.010G199000 [exp] 420 / 4e-149 AT3G11400 422 / 4e-150 eukaryotic translation initiation factor 3G1 (.1.2) Potri.001G304000 [exp] 64 / 2e-11 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.011G130300 [exp] 61 / 2e-11 AT5G54580 161 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G062700 [exp] 64 / 3e-11 AT1G22760 638 / 0.0 poly(A) binding protein 3 (.1) Potri.005G198500 [exp] 64 / 5e-11 AT1G22760 623 / 0.0 poly(A) binding protein 3 (.1) Potri.001G207100 [exp] 61 / 8e-11 AT3G26420 175 / 7e-55 RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) Potri.008G097500 [exp] 60 / 1e-10 AT1G13690 230 / 6e-78 ATPase E1 (.1) Potri.001G409800 [exp] 59 / 2e-10 AT5G54580 174 / 2e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G139300 [exp] 60 / 4e-10 AT1G17370 580 / 0.0 oligouridylate binding protein 1B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0511 [flax] [poplar] Retroviral_zf PF12353 [flax] [poplar] eIF3g Eukaryotic translation initiation factor 3 subunit G
Representative CDS sequence Show only first row Show all	>Lus10030482 pacid=23140546 polypeptide=Lus10030482 locus=Lus10030482.g ID=Lus10030482.BGIv1.0 annot-version=v1.0 ATGACGGCAGACACAGCTGGAATGACGGTAGACACAGCTGCACCGAGCAAGCTCCGATGGGGAGAATTGGAGGATGACGGCGAGGATCTGGACTTTCTGT TGCCTCCGAAGGAGGTTATCGGACCCGATCACAACGGGATCAAGAGAGTGATCGAGTACAAATTCAACGACGATGGCAATAAGATCAAGATTACGACCAC CACCCGCGTTAGGAAGCTGGCCAACGCTCGCCTGAGTCGACGTGCCGTTGAGCGGAGGAGTTGGGCTAAGTTCGGCGACGCCGTTCATGAGGACGTTGGT GCTCGGCTCACTATGGTCTCCACTGAGGAGATCCTGCTTGAACGACCTAGGGCTCCAGGTACCAAAGCTGAAGAAAACAAGATGGGTGGAGATAACTTGT CACAGCTTGGAAAGGCAGGAGCTGTACTGATGCTTTGCAGAACCTGTGGTAAGAAGGGAGATCACTGGACATCAAGGTGTCCATACAAGGATCTCGCTGC TCAGACCGAATCATTCATCGATAAACCTCCGACATCCGATTCTTCTGCTGCCGGTGGTCCTGCTGCTCCTGGCAAGGCTTCTTACGTGCCGCCAAGCATG AGGCCGGGAGCAGAGAGGAGTGTTGGATCAGATATGAGGAGAAGGAACGACGAGAACTCTGTTCGTGTCACTAACTTGTCTGAGGATACCCGCGAGCAGG ACTTGAAGGAGCTGTTCCTTCCATTCGGTCACGTGACCCGTACTTACGTTGCCATCGATCAGAAGACTGGCGTGAGCAGAGGCTTCGGTTTCGTCAACTT TGCCAACAAGGAGGATGCTGAGAGGGCGATAGACAAGCTTAACGGCTATGGTTACGACAATCTCATCCTTCGTGTCGAGTGGGCTACTCCTCGAGCAAAC TAA
AA sequence Show only first row Show all	>Lus10030482 pacid=23140546 polypeptide=Lus10030482 locus=Lus10030482.g ID=Lus10030482.BGIv1.0 annot-version=v1.0 MTADTAGMTVDTAAPSKLRWGELEDDGEDLDFLLPPKEVIGPDHNGIKRVIEYKFNDDGNKIKITTTTRVRKLANARLSRRAVERRSWAKFGDAVHEDVG ARLTMVSTEEILLERPRAPGTKAEENKMGGDNLSQLGKAGAVLMLCRTCGKKGDHWTSRCPYKDLAAQTESFIDKPPTSDSSAAGGPAAPGKASYVPPSM RPGAERSVGSDMRRRNDENSVRVTNLSEDTREQDLKELFLPFGHVTRTYVAIDQKTGVSRGFGFVNFANKEDAERAIDKLNGYGYDNLILRVEWATPRAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10030482 [exp]	0	1
AT1G23290		RPL27A, RPL27AB	RIBOSOMAL PROTEIN L27A, Riboso...		Lus10004617 [exp]	2.0	0.9629
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Lus10003171 [exp]	2.2	0.9441
AT3G49910			Translation protein SH3-like f...		Lus10019283 [exp]	4.0	0.9495
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Lus10015340 [exp]	4.9	0.9340
AT3G49910			Translation protein SH3-like f...		Lus10018139 [exp]	5.1	0.9592
AT4G28210		EMB1923	embryo defective 1923 (.1)		Lus10033723 [exp]	5.3	0.9311
AT5G42790		ARS5, ATPSM30, ...	ARSENIC TOLERANCE 5, proteasom...		Lus10007396 [exp]	6.5	0.9378
AT3G18790			unknown protein		Lus10023225 [exp]	8.1	0.9041
AT5G43970		ATTOM22-V, TOM2...	TRANSLOCASE OUTER MITOCHONDRIA...		Lus10024950 [exp]	8.9	0.9304
AT2G33730			P-loop containing nucleoside t...		Lus10015187 [exp]	8.9	0.9298

Compare expression of checked genes

Lus10030482 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.