Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25810 394 / 2e-139 XTH23, XTR6 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) AT5G57550 392 / 2e-138 XTR3, XTH25, EXGT-A5 xyloglucan endotransglycosylase 3, xyloglucan endotransglucosylase/hydrolase 25 (.1) AT5G57560 385 / 1e-135 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1) AT4G30270 358 / 4e-125 XTH24, SEN4, BRU1, MERI-5, MERI5B SENESCENCE 4, meristem-5, MERISTEM 5, xyloglucan endotransglucosylase/hydrolase 24 (.1) AT5G57530 348 / 5e-121 AtXTH12, XTH12 xyloglucan endotransglucosylase/hydrolase 12 (.1) AT5G57540 347 / 2e-120 AtXTH13, XTH13 xyloglucan endotransglucosylase/hydrolase 13 (.1) AT2G18800 347 / 2e-120 ATXTH21, XTH21, XTR17 xyloglucan endotransglucosylase/hydrolase 21 (.1) AT4G25820 345 / 9e-120 ATXTH14, XTR9, XTH14 xyloglucan endotransglycosylase 9, xyloglucan endotransglucosylase/hydrolase 14 (.1) AT3G23730 341 / 2e-118 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1) AT4G14130 339 / 1e-117 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012834 [exp] 400 / 1e-141 AT5G57550 292 / 5e-99 xyloglucan endotransglycosylase 3, xyloglucan endotransglucosylase/hydrolase 25 (.1) Lus10028947 [exp] 344 / 1e-119 AT4G14130 437 / 2e-156 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Lus10000678 [exp] 344 / 2e-119 AT3G23730 410 / 6e-146 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010938 [exp] 342 / 6e-119 AT4G14130 386 / 3e-136 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Lus10021638 [exp] 342 / 8e-119 AT3G23730 413 / 7e-147 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10031393 [exp] 341 / 3e-118 AT3G23730 388 / 8e-137 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010939 [exp] 340 / 9e-118 AT3G23730 384 / 2e-135 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10031392 [exp] 338 / 5e-117 AT3G23730 384 / 3e-135 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10007349 [exp] 325 / 5e-112 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G095100 [exp] 394 / 2e-139 AT4G25810 420 / 1e-149 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.013G005700 [exp] 393 / 5e-138 AT4G25810 431 / 5e-153 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G095200 [exp] 390 / 1e-137 AT4G25810 414 / 3e-147 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G094800 [exp] 389 / 3e-137 AT4G25810 413 / 1e-146 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.005G007200 [exp] 380 / 1e-133 AT4G25810 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G094900 [exp] 367 / 1e-128 AT4G25810 410 / 8e-146 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.006G071200 [exp] 367 / 2e-128 AT4G25810 379 / 3e-133 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.014G146100 [exp] 352 / 1e-122 AT3G23730 451 / 1e-161 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.005G201200 [exp] 349 / 3e-121 AT4G14130 405 / 2e-143 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.005G201250 [exp] 348 / 6e-121 AT4G14130 395 / 2e-139 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10030484 pacid=23140639 polypeptide=Lus10030484 locus=Lus10030484.g ID=Lus10030484.BGIv1.0 annot-version=v1.0 ATGGCGACACCCACCTCCAACACCCCTTTCCTACTCCTCTCAATCACCCTCATCATCACCACCACCATCGCGGCTCAGACCAATCTGGACCGCGAATTCG ACCTCACGTGGGGAGAAGGCCGCGGCAAGATCGTTGCCGACGGCCAGTTGCTCACCCTGACCCTCGATCACACTTCGGGGTCAGGGTTCCAGTCCAAGAA CAAGTACCTGTACGGGAAGCTCGACATGCAGCTGAAGCTAGTCCCCGGCAACTCTGCTGGCACCGTTACTGCTTACTTCTTGAAGTCTGATGGAGATGCG TGGGACGAGATTGATTATGAGTTCTTGGGGAACTTGAGTGGCGATCCTTACACGGTCCATACGAACGTGTTCACGAACGGGAAAGGCGATCGGGAGCAGC AGTTTCGTCTTTGGTTCGATCCGACGACTGATTTTCATACTTACTCGATCCTTTGGAACCCCAAGAGCATCGTTTTCACCATCGACGGCACACCGATCAG AGAATTCAAGAACCTGGAATCCGTCGGAGTCCCCTTCCCAACATCACAACCCATGAGGCTCTACTCGAGCCTATGGAGCGCCGACGACTGGGCCACCAGG GGAGGGACCCTGAAGACCGACTGGTCCCAGGCTCCGTTCTCGGCCTCCTACAAAGACTTCAAAGCAGGGGAGGCCTGCATAGTGAATAACGATGGAGCGA ACCCAACTTGCTCGCCTGCCGGTAGCACGTCTTGGCTTAACGAGCAGCTGAACTCGGTGAACGAGCAGCGGATGAGGTCGGTCCAGAGCCATTACATGAT CTACAACTACTGTACTGATTCGGAGAGGTTTCCTCAGGGGTTCCCTAAAGAGTGTACTGCAGAATGA
AA sequence Show only first row Show all	>Lus10030484 pacid=23140639 polypeptide=Lus10030484 locus=Lus10030484.g ID=Lus10030484.BGIv1.0 annot-version=v1.0 MATPTSNTPFLLLSITLIITTTIAAQTNLDREFDLTWGEGRGKIVADGQLLTLTLDHTSGSGFQSKNKYLYGKLDMQLKLVPGNSAGTVTAYFLKSDGDA WDEIDYEFLGNLSGDPYTVHTNVFTNGKGDREQQFRLWFDPTTDFHTYSILWNPKSIVFTIDGTPIREFKNLESVGVPFPTSQPMRLYSSLWSADDWATR GGTLKTDWSQAPFSASYKDFKAGEACIVNNDGANPTCSPAGSTSWLNEQLNSVNEQRMRSVQSHYMIYNYCTDSERFPQGFPKECTAE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Lus10030484 [exp]	0	1
AT2G38870			Serine protease inhibitor, pot...		Lus10014740 [exp]	1.0	0.9558
AT2G36780			UDP-Glycosyltransferase superf...		Lus10014402 [exp]	1.7	0.8915
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10038282 [exp]	2.8	0.9103
AT3G61490			Pectin lyase-like superfamily ...		Lus10036383 [exp]	3.5	0.8859
AT5G62730			Major facilitator superfamily ...		Lus10033101 [exp]	5.7	0.7627
					Lus10040690 [exp]	6.3	0.8779
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10030567 [exp]	6.5	0.8004
AT4G19460			UDP-Glycosyltransferase superf...		Lus10033297 [exp]	7.9	0.8489
AT2G39980			HXXXD-type acyl-transferase fa...		Lus10040222 [exp]	8.8	0.8159
AT1G68040			S-adenosyl-L-methionine-depend...		Lus10013484 [exp]	9.8	0.7245

Compare expression of checked genes

Lus10030484 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.