Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26830 1317 / 0 CUL3A, ATCUL3A, ATCUL3 cullin 3A, cullin 3 (.1) AT1G69670 1310 / 0 CUL3B, ATCUL3B ARABIDOPSIS THALIANA CULLIN 3B, cullin 3B (.1) AT5G46210 510 / 9e-171 CUL4, ATCUL4 cullin4 (.1) AT4G02570 416 / 4e-135 AXR6, ATCUL1 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) AT1G02980 383 / 3e-122 ATCUL2, CUL2 cullin 2 (.1) AT1G43140 356 / 3e-112 Cullin family protein (.1) AT1G59790 116 / 7e-28 Cullin family protein (.1) AT1G59800 91 / 6e-20 Cullin family protein (.1) AT4G12100 70 / 2e-12 Cullin family protein (.1) AT3G46910 66 / 1e-11 Cullin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012835 [exp] 1508 / 0 AT1G26830 1320 / 0.0 cullin 3A, cullin 3 (.1) Lus10036739 [exp] 1446 / 0 AT1G26830 1335 / 0.0 cullin 3A, cullin 3 (.1) Lus10037188 [exp] 1442 / 0 AT1G26830 1328 / 0.0 cullin 3A, cullin 3 (.1) Lus10023306 [exp] 441 / 6e-146 AT5G46210 1077 / 0.0 cullin4 (.1) Lus10032200 [exp] 414 / 3e-134 AT4G02570 1269 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10024562 [exp] 413 / 7e-134 AT4G02570 1271 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10028917 [exp] 398 / 4e-128 AT4G02570 1290 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10004334 [exp] 395 / 5e-127 AT4G02570 1279 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10038504 [exp] 387 / 3e-126 AT5G46210 913 / 0.0 cullin4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G093200 [exp] 1409 / 0 AT1G26830 1345 / 0.0 cullin 3A, cullin 3 (.1) Potri.008G148300 [exp] 1404 / 0 AT1G26830 1342 / 0.0 cullin 3A, cullin 3 (.1) Potri.011G084400 [exp] 512 / 3e-171 AT5G46210 1250 / 0.0 cullin4 (.1) Potri.004G132900 [exp] 503 / 2e-167 AT5G46210 1211 / 0.0 cullin4 (.1) Potri.008G217300 [exp] 422 / 2e-137 AT4G02570 1272 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.010G023800 [exp] 420 / 2e-136 AT4G02570 1265 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.003G115500 [exp] 413 / 7e-134 AT4G02570 1209 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.001G117200 [exp] 410 / 7e-133 AT4G02570 1226 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.005G027800 [exp] 55 / 8e-08 AT4G02570 143 / 2e-38 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.008G217700 [exp] 54 / 2e-07 AT4G02570 225 / 3e-68 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00888 [flax] [poplar] Cullin Cullin family CL0123 [flax] [poplar] HTH PF10557 [flax] [poplar] Cullin_Nedd8 Cullin protein neddylation domain
Representative CDS sequence Show only first row Show all	>Lus10030485 pacid=23140711 polypeptide=Lus10030485 locus=Lus10030485.g ID=Lus10030485.BGIv1.0 annot-version=v1.0 ATGAGTAACCAGAAGAAGAGGAGCTTCCACATAGAGGCGTTCAAGCACCGTGTGGTGGTGGATCCGAAATACGCAGACAAGACCTGGAAGGTCCTCGAGC ATGCTATCCACGAGATTTACAACCACAACGCCAGTGGCCTCAGCTTCGAGGAGCTCTACAGGAATGCATACAATATGGTTCTGCACAAATTTGGCGAGAA ATTGTACTCTGGCCTGGTTTCTACAATGACTTCACATTTAAAGGAGATATCAAAATCTATCGAGGCTGCGCAGGGAGATTCCTTTTTAGAGGAGCTGAAC AGGAAGGGGAATGATCACAACAAAGCGCTTCAAATGATCAGGGACATATTGATGTATATGGATAGAACTTATATTCCGAGCACTCACAAGACTCCAGTTC ATGAGCTCGGTCTCAACTTGTGGAGGGATAATATTATCAACTCCAGCAAGATTCAGATCAGGCTGTTGAATACGCTTCTTGAGTTAGTCCGTAGGGAGAG AACTGGTGATGTCATAGACCGTGGTCTTATGAGGAACATAATCAAGATGCTGATGGATTTGGGCGCTGTTGTTTACCAGGAGAACTTTGAGAAGCATTTT CTTGACGTTTCGGCTGAGTTTTACATGGTTGAGTCTCAGCACTTCATTGAATGCTGTGACTGTGGCGAGTATCTGAAGAAAGCTGAGAAGCGGTTGAATG AAGAGATAGAAAGGGTGACACACTACTTGGATACAAAGAGTGAGACCAAGATAACTAATGTGGTGGAGAAGGAGATGATTGCCAATCATATGCTGAGGCT CGTCCACATGGAAAATTCAGGTTTGGTGAACATGCTTCTTGATGATAAGTATGAGGATTTGGGAAGAATGTATAATTTGTTCCGTCGAGTTCCCAATGGT CTCTCAACAATCAGGGATGTCATGACTTCTCATCTCAGAGAAACTGGGAAGCAACTTGTCACTGATCCAGAAAGGTTGAAAGATCCGGTGGATTTTGTGC AGCGTTTGTTGGACGAGAAAGACAAGTACGATGCCATCATAAACAAGGCCTTCATCAATGACAAGACATTCCAGAATGCGTTGACCAAGTCGTTTGAATA TTTCATCAACTTGAATGCTCGTTCTCCTGAATACATCTCATTGTTTGTCGATGACAAACTGAGGAAGGGGCTTAAGGGAGTTAGTGAAGAAGATGTTGAG ATTATTCTGGACAAAGTAATGATGCTGTTCCGGTACTTGCAGGAGAAGGACGTATTTGAAAAGTACTACAAACAGCACTTAGCCAAGAGACTTCTATCGG GGAAAACTGTGTCGGATGATGCAGAGAGAAGTCTGATAGTGAAACTCAAGACTGAATGTGGCTACCAGTTCACTTCGAAGCTAGAAGGTATGTTTACAGA CATGAAGACGTCTCAGGATACGATGCACGGGTTTTATTCGAGCCATCCCGATCTAGGAGATGGGCCAACCCTTGTTGTTCAGGTCTTGACTACCGGGTCT TGGCCGACCCAGCCGAGTGTCACTTGCAACTTACCTTCTGAAATGTCGGTACTCTGCGAGAAGTTCAGGTCATATTACCTCGGAACTCACACCGGTAGGA GGTTGTCATGGCAGACTAACATGGGCAACGCGGATCTCAAGGCGACTTTCGGGAAGGGTCAGAAGCATGAGCTGAACGTTTCAACTTATCAAATGTGTGT TCTCATGCTATTCAACAACGCCGATCGTCTTACTTACAAAGAAATCGAGCAGGCCACTGAGATCCCGGCCCCTGAACTGAAGAGGTGCTTGCAGTCCATG GCTTGCGTGAAGGGCAAAAACGTCCTCCGTAAAGAGCCCATGAGCAAAGAAATCGGCGAGGAGGATGCATTCTTCATCAACGACAAGTTCTCGAGCAAGT TCTACAAGGTGAAGATAGGAACCGTAGTCGCACAGAAGGAATCAGAACCCGAGAAGCAAGAAACACGGCAAAGAGTGGAAGAGGACAGGAAGCCTCAGAT CGAAGCTGCATTAGTTAGAATCATGAAGTCAAGGAGGGTACTAGATCATAACAACTTAATCAGCGAGGTGACGAAGCAACTACAGCAACGGTTCTTACCC AATCCGACCGAGATCAAGAAGCGAATCGAGTCACTCATAGAGCGCGATTTCTTGGAGAGGGATAACGTCGACAGAAAATTGTACCGATATCTTGCATAG
AA sequence Show only first row Show all	>Lus10030485 pacid=23140711 polypeptide=Lus10030485 locus=Lus10030485.g ID=Lus10030485.BGIv1.0 annot-version=v1.0 MSNQKKRSFHIEAFKHRVVVDPKYADKTWKVLEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVSTMTSHLKEISKSIEAAQGDSFLEELN RKGNDHNKALQMIRDILMYMDRTYIPSTHKTPVHELGLNLWRDNIINSSKIQIRLLNTLLELVRRERTGDVIDRGLMRNIIKMLMDLGAVVYQENFEKHF LDVSAEFYMVESQHFIECCDCGEYLKKAEKRLNEEIERVTHYLDTKSETKITNVVEKEMIANHMLRLVHMENSGLVNMLLDDKYEDLGRMYNLFRRVPNG LSTIRDVMTSHLRETGKQLVTDPERLKDPVDFVQRLLDEKDKYDAIINKAFINDKTFQNALTKSFEYFINLNARSPEYISLFVDDKLRKGLKGVSEEDVE IILDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMHGFYSSHPDLGDGPTLVVQVLTTGS WPTQPSVTCNLPSEMSVLCEKFRSYYLGTHTGRRLSWQTNMGNADLKATFGKGQKHELNVSTYQMCVLMLFNNADRLTYKEIEQATEIPAPELKRCLQSM ACVKGKNVLRKEPMSKEIGEEDAFFINDKFSSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAALVRIMKSRRVLDHNNLISEVTKQLQQRFLP NPTEIKKRIESLIERDFLERDNVDRKLYRYLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10030485 [exp]	0	1
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10012835 [exp]	1.0	0.9073
AT3G14470			NB-ARC domain-containing disea...		Lus10005218 [exp]	2.2	0.8219
AT5G47940			unknown protein		Lus10019713 [exp]	3.3	0.7897
AT3G16090		AtHrd1A	homolog of yeast Hrd1, RING/U-...		Lus10023477 [exp]	4.0	0.8238
AT2G05170		ATVPS11	vacuolar protein sorting 11 (....		Lus10006378 [exp]	5.5	0.8260
AT5G35840		PHYC	phytochrome C (.1)		Lus10006389 [exp]	6.5	0.8184
AT2G44200			CBF1-interacting co-repressor ...		Lus10038730 [exp]	7.0	0.8037
AT4G02350		SEC15B	exocyst complex component sec1...		Lus10009856 [exp]	7.3	0.7496
AT5G26200			Mitochondrial substrate carrie...		Lus10025015 [exp]	8.2	0.7771
AT5G15680			ARM repeat superfamily protein...		Lus10035141 [exp]	8.8	0.8272

Compare expression of checked genes

Lus10030485 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.