Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02880 339 / 2e-116 mucin-related (.1) AT5G62270 97 / 2e-22 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012838 [exp] 584 / 0 AT2G02880 346 / 4e-119 mucin-related (.1) Lus10021682 [exp] 114 / 8e-29 AT5G62270 425 / 7e-149 unknown protein Lus10035022 [exp] 114 / 8e-29 AT5G62270 425 / 6e-149 unknown protein Lus10034311 [exp] 114 / 9e-29 AT5G62270 447 / 3e-157 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G004400 [exp] 360 / 3e-125 AT2G02880 335 / 1e-115 mucin-related (.1) Potri.012G021000 [exp] 163 / 4e-50 AT2G02880 161 / 6e-50 mucin-related (.1) Potri.007G133900 [exp] 101 / 7e-24 AT5G62270 365 / 3e-124 unknown protein Potri.017G017901 [exp] 45 / 3e-05 AT5G62270 241 / 7e-77 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030486 pacid=23140756 polypeptide=Lus10030486 locus=Lus10030486.g ID=Lus10030486.BGIv1.0 annot-version=v1.0 ATGCAATTTCTCAATCGAATTGCAGGTTTCTCTGCAAAGGAAGCTAATCTAGCGAGATATGGACATGGGTTTGGAAGTATGAATCACGGTTCGAGTTTAG TTGGTTTGGTTTCGAGGTATCTATCAACCAGTGGCGGGGGAAGTGACGGAGGTGGGGGAGGAAGAGGAAGAGATGATAATGAATGGAATGATGCGTGGGA GACAGCTTGGCTACCGGATGATCTAAAGGGGAAAGACCGAGCTCCATGGGAAACGGACGTGAATTTTCCGTCGACGGCGACGGCGGTTCCCCCGTCGGAG CTGGACTCGGAGACGAAAGCGTTCGTGGAGGAGATGAACGAGAATTGGGATCAACGCCGGAGAACAACGAATAACCAGAAGGTTGAAGAAGGAAGGGAGA AGAATAACGGTCTGTATAGTCTTGAGAATATGAAGAAGGATTACAGATTGAAGAAGCAGAGGATCCATGCTGGATTATGGGCTAAGGAGATCGAGAAGAT GCAGGAGTCGAAATCGGGAGTCGCCGGTGGTGGCGTTGATGATATCGATCGCTTGCTCGATAGTTACTCCGAGATTTTCGACACAAATAATGCCGACCTG GATGACTCGAAGCTGCCGACTTCGTCTTCAGAGCTTAAGAACAAGCCGGACGGGTGGGAAACTACTTCGAAAGCTCCGGACGGGAATGTATGGGACATGT CACAGAGGGAAGAGGACATTCTGCATCAAGAGTTCGATAGACGAATTGCCTTCTGCAAATTCCAGATAGCAAGCTTTATAAAGAGCCATATCTTTAGCAG GAGAAGACCGATCGATGGATGGAAGTACATGATCGAAGTAGTAGGGCCAAATTCCAGGAAAGGGAAAGGCAGTGTTTCGAGAATTGCTGCTCTATCCGAT CCATCGACTCAGCCGTTCAAGGAAGAGAAGACGAATTCGCGCAGCAGCAGCAGCTTGGAACCTTCGAAGAGGAGACATCAGTTCACTGCCTGA
AA sequence Show only first row Show all	>Lus10030486 pacid=23140756 polypeptide=Lus10030486 locus=Lus10030486.g ID=Lus10030486.BGIv1.0 annot-version=v1.0 MQFLNRIAGFSAKEANLARYGHGFGSMNHGSSLVGLVSRYLSTSGGGSDGGGGGRGRDDNEWNDAWETAWLPDDLKGKDRAPWETDVNFPSTATAVPPSE LDSETKAFVEEMNENWDQRRRTTNNQKVEEGREKNNGLYSLENMKKDYRLKKQRIHAGLWAKEIEKMQESKSGVAGGGVDDIDRLLDSYSEIFDTNNADL DDSKLPTSSSELKNKPDGWETTSKAPDGNVWDMSQREEDILHQEFDRRIAFCKFQIASFIKSHIFSRRRPIDGWKYMIEVVGPNSRKGKGSVSRIAALSD PSTQPFKEEKTNSRSSSSLEPSKRRHQFTA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02880			mucin-related (.1)		Lus10030486 [exp]	0	1
AT2G02880			mucin-related (.1)		Lus10012838 [exp]	1.4	0.8803
AT5G11500			unknown protein		Lus10038625 [exp]	2.4	0.8658
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Lus10008648 [exp]	2.6	0.8085
AT1G03650			Acyl-CoA N-acyltransferases (N...		Lus10025567 [exp]	3.2	0.8258
AT2G44850			unknown protein		Lus10028204 [exp]	6.0	0.8309
AT2G04865			Aminotransferase-like, plant m...		Lus10006393 [exp]	8.0	0.8289
					Lus10027487 [exp]	8.7	0.7246
AT1G71870			MATE efflux family protein (.1...		Lus10027277 [exp]	9.1	0.7533
AT1G50300		TAF15	TBP-associated factor 15 (.1)		Lus10030555 [exp]	9.8	0.7990
AT1G27695			glycine-rich protein (.1.2)		Lus10032855 [exp]	13.2	0.8138

Compare expression of checked genes

Lus10030486 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.