Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39850 325 / 7e-115 Ribosomal protein S4 (.1) AT5G15200 323 / 2e-114 Ribosomal protein S4 (.1.2) AT5G15750 46 / 3e-06 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein (.1) ATCG00380 41 / 0.0002 ATCG00380.1, RPS4 chloroplast ribosomal protein S4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012839 [exp] 368 / 5e-132 AT5G15200 333 / 4e-118 Ribosomal protein S4 (.1.2) Lus10008624 [exp] 342 / 7e-122 AT5G15200 342 / 8e-122 Ribosomal protein S4 (.1.2) Lus10042193 [exp] 327 / 3e-109 AT5G39850 327 / 2e-108 Ribosomal protein S4 (.1) Lus10001767 [exp] 50 / 9e-08 AT5G15750 317 / 3e-112 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G076500 [exp] 337 / 1e-119 AT5G39850 350 / 1e-124 Ribosomal protein S4 (.1) Potri.016G076800 [exp] 337 / 1e-119 AT5G39850 350 / 1e-124 Ribosomal protein S4 (.1) Potri.018G062300 [exp] 335 / 6e-119 AT5G39850 332 / 1e-117 Ribosomal protein S4 (.1) Potri.007G056100 [exp] 332 / 1e-117 AT5G39850 337 / 1e-119 Ribosomal protein S4 (.1) Potri.011G094500 [exp] 329 / 2e-116 AT5G39850 336 / 3e-119 Ribosomal protein S4 (.1) Potri.006G209700 [exp] 328 / 3e-116 AT5G39850 325 / 6e-115 Ribosomal protein S4 (.1) Potri.006G209801 [exp] 179 / 3e-58 AT5G15200 200 / 7e-67 Ribosomal protein S4 (.1.2) Potri.006G209900 [exp] 138 / 6e-43 AT5G39850 130 / 3e-40 Ribosomal protein S4 (.1) Potri.017G101200 [exp] 54 / 4e-09 AT5G15750 291 / 6e-102 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein (.1) Potri.004G113600 [exp] 50 / 6e-08 AT5G15750 312 / 3e-110 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0492 [flax] [poplar] S4 PF01479 [flax] [poplar] S4 S4 domain CL0492 [flax] [poplar] S4 PF00163 [flax] [poplar] Ribosomal_S4 Ribosomal protein S4/S9 N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10030487 pacid=23140627 polypeptide=Lus10030487 locus=Lus10030487.g ID=Lus10030487.BGIv1.0 annot-version=v1.0 ATGGTGCACGTTGCTTATTTCCGCAACTATGGGAAAACCTTTAAGAAACCTAGACGTCCTTATGAGAAGGAGCGTTTGGATGCTGAGCTGAAGCTGGTTG GAGAATACGGTCTTAGGGCCAAGAGGGAACTCTGGAGGGTGCAGTATGCTCTGAGCCGCATCCGTAATGCCGCACGAATGCTTCTGACCCTTGACGAGAA GAACCCCCGTCGTATCTTTGAAGGTGAAGCCCTTCTGAGGAGGATGAACAAGTATGGGCTCTTAGATGAGAGCCAGAACAAGCTCGATTATGTCTTGGCC CTGACTGTTGAGAACTTCCTTGAGCGTCGCCTCCAGACTCTTGTGTTCAAGTCTGGGATGGCCAAATCTATCCATCATGCCAGAGTTCTCATCAGGCAGA AGCACATCAGGGTCGGGAGGCAGGTTGTGAACATCCCATCCTTCATGGTGAGGCTGGACTCACAGAAGCACATCGACTTCTCGCTCACCAGCCCATTCGG CAACTCTGACATCCAAGGTAGAGTGAAGAGGAAGAACATGAAGGCTGCTTCTTCCAAGAAGGACGATGCTGCCGATGAGGATTAA
AA sequence Show only first row Show all	>Lus10030487 pacid=23140627 polypeptide=Lus10030487 locus=Lus10030487.g ID=Lus10030487.BGIv1.0 annot-version=v1.0 MVHVAYFRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRAKRELWRVQYALSRIRNAARMLLTLDEKNPRRIFEGEALLRRMNKYGLLDESQNKLDYVLA LTVENFLERRLQTLVFKSGMAKSIHHARVLIRQKHIRVGRQVVNIPSFMVRLDSQKHIDFSLTSPFGNSDIQGRVKRKNMKAASSKKDDAADED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15200			Ribosomal protein S4 (.1.2)		Lus10030487 [exp]	0	1
AT5G12110			Glutathione S-transferase, C-t...		Lus10026784 [exp]	1.7	0.9378
AT1G36240			Ribosomal protein L7Ae/L30e/S1...		Lus10019681 [exp]	2.0	0.9412
AT1G26880			Ribosomal protein L34e superfa...		Lus10037177 [exp]	5.1	0.9399
AT5G24510			60S acidic ribosomal protein f...		Lus10008943 [exp]	5.2	0.9269
AT5G15200			Ribosomal protein S4 (.1.2)		Lus10012839 [exp]	6.6	0.9369
AT5G12110			Glutathione S-transferase, C-t...		Lus10036101 [exp]	7.7	0.9361
AT3G13940			DNA binding;DNA-directed RNA p...		Lus10020738 [exp]	9.2	0.9039
AT5G35620		eIFiso4E, EIF(I...	LOSS OF SUSCEPTIBILITY TO POTY...		Lus10011776 [exp]	10.4	0.8980
AT1G26880			Ribosomal protein L34e superfa...		Lus10012829 [exp]	12.0	0.9184
AT4G29410			Ribosomal L28e protein family ...		Lus10032699 [exp]	12.2	0.9298

Compare expression of checked genes

Lus10030487 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.