Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26920 81 / 8e-20 unknown protein AT1G69760 71 / 8e-16 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012840 [exp] 202 / 2e-67 AT1G26920 92 / 1e-23 unknown protein Lus10037195 [exp] 99 / 1e-26 AT1G26920 106 / 2e-29 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030488 pacid=23140602 polypeptide=Lus10030488 locus=Lus10030488.g ID=Lus10030488.BGIv1.0 annot-version=v1.0 ATGGCGGACTCCATCCTAAAGCGGCCGAGGGAAGACTCTGACGAGTCCGAAAACAAACGCCACAAACCCTACAACGACGAAAACTCCATACTATCATCCT TCCTTGACCAAGAAGAAGAAGAGCCAATCCAAGACTTGTCATCTTTCCTCTCATCCATCCAAGAGGAGCTCTCCTCTCCGGCACCGGTGCCGGAGAATCA GGACTCCTCCTCATCCTCCACCACGGTCGAGGACTATGACTATGACTACGCATCGTCCTCGAGTAATGTCGAGGAAGAGGAGGAGAGGGAGCGAGTCATC CGACACCTTCTCGAGGCGTCGGATGACGAGCTCGGGATACCGACGGTGGATAACGAGGAGATTGGTTTGCCACCGCCGGTGGTTACGGAGGCTGTGGAGG AGGAAGATGGGTTTGGGATTAACGATGGGTTGTGGGAGTTTGAGGATTTGAATGCAAACTATTACACGTTGTTGCAGTCTGAATTGTTCATGTGA
AA sequence Show only first row Show all	>Lus10030488 pacid=23140602 polypeptide=Lus10030488 locus=Lus10030488.g ID=Lus10030488.BGIv1.0 annot-version=v1.0 MADSILKRPREDSDESENKRHKPYNDENSILSSFLDQEEEEPIQDLSSFLSSIQEELSSPAPVPENQDSSSSSTTVEDYDYDYASSSSNVEEEEERERVI RHLLEASDDELGIPTVDNEEIGLPPPVVTEAVEEEDGFGINDGLWEFEDLNANYYTLLQSELFM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26920			unknown protein		Lus10030488 [exp]	0	1
AT3G11690			unknown protein		Lus10013608 [exp]	3.2	0.8206
AT5G43280		ATDCI1	"delta\(3,5\),delta\(2,4\)-die...		Lus10002583 [exp]	4.7	0.8324
AT2G35900			unknown protein		Lus10021249 [exp]	8.8	0.8185
AT3G11280	MYB		Duplicated homeodomain-like su...		Lus10040225 [exp]	9.6	0.8017
AT3G57540			Remorin family protein (.1)		Lus10042367 [exp]	10.2	0.7925
AT3G11280	MYB		Duplicated homeodomain-like su...		Lus10028264 [exp]	13.5	0.7860
AT3G14460			LRR and NB-ARC domains-contain...		Lus10006793 [exp]	14.7	0.7717
AT5G42850			Thioredoxin superfamily protei...		Lus10037477 [exp]	15.8	0.7704
AT3G57540			Remorin family protein (.1)		Lus10026302 [exp]	18.0	0.7916
AT4G18372			Small nuclear ribonucleoprotei...		Lus10042823 [exp]	18.3	0.7666

Compare expression of checked genes

Lus10030488 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.