Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02870 534 / 0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT1G14330 520 / 0 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G26930 509 / 2e-180 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G74510 461 / 1e-160 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT5G60570 325 / 2e-108 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G27150 219 / 1e-66 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G40680 197 / 1e-58 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G67480 100 / 2e-23 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G16250 94 / 5e-21 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G55270 87 / 3e-18 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012841 [exp] 816 / 0 AT2G02870 568 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10036735 [exp] 648 / 0 AT2G02870 570 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10037196 [exp] 556 / 0 AT2G02870 536 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10023608 [exp] 362 / 4e-123 AT1G26930 353 / 9e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037413 [exp] 360 / 3e-122 AT5G60570 589 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10041299 [exp] 358 / 1e-121 AT5G60570 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10024239 [exp] 146 / 2e-40 AT1G26930 147 / 3e-41 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10013899 [exp] 104 / 7e-24 AT1G16250 523 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10002112 [exp] 94 / 1e-20 AT1G16250 525 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G063200 [exp] 516 / 0 AT1G74510 529 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.019G042100 [exp] 379 / 1e-128 AT5G60570 419 / 3e-145 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G077800 [exp] 373 / 2e-126 AT5G60570 402 / 2e-138 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G331500 [exp] 239 / 2e-74 AT3G27150 370 / 2e-125 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.017G069500 [exp] 226 / 2e-69 AT3G27150 355 / 7e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G104300 [exp] 113 / 2e-27 AT1G67480 473 / 1e-167 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.008G176000 [exp] 100 / 4e-23 AT1G67480 487 / 3e-173 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.001G008000 [exp] 97 / 7e-22 AT1G55270 731 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.010G059200 [exp] 97 / 1e-21 AT1G67480 480 / 2e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G004500 [exp] 95 / 3e-21 AT1G16250 551 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF01344 [flax] [poplar] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Lus10030489 pacid=23140670 polypeptide=Lus10030489 locus=Lus10030489.g ID=Lus10030489.BGIv1.0 annot-version=v1.0 ATGTTGGAGGGGAGATCCTGTGATTCCTGCATGGTGACTAGAGTGTTTGGAGGCTCCTCCTGCCAATCCGAATCGCAGTGGAATTTCATGAACTACCGGT CTGGAAGCAGCAGCAAGCATTCCTTGGAGGATTCGGAGGACGATTTCCGGCTATCCAAATCTCGCAGGATATTGAGCAATGTCATCATCGAGCAGGCTGA TGAGGCTGCTGATGATGATGGTAATGATCAAGCTGGCCAGTCCTCCAACTCGGATCCCCTAATCGATCCGATCGGACGGGACATTTCGATAGACTGCTTC ATAAAGAACTCTCGGTCCGATTACGGATCCTTAGCCTCGGTGAATCGGAGCTTCCGGAACTTGTTTCGGAGCGGGGAGATATATAAACTCAGGAGGCTAC GCGGTGTGATCGAGCACTGGGTTTACTTCTCGTGCCACTTGCTCGAATGGGAGGCCTTCGATCCCATTCGTCGCAGGTGGATGCATTTGCCTAGGATGCC ATCGAACGAATGCTTCATGTGTTCTGATAAGGAGTCCTTGGCTGTAGGTACCGAGCTCCTTGTATTCGGTAAGGAGGTTATGTCCTATGTTATATACAGA TACAGCATACTAACCAATTCTTGGTCCACCGGTATGACAATGAACTCCCCGAGGTGCCTTTTCGGGTCCGCAAGCCTAGGAGAGATCGCAATTTTTGCAG GTGGTTGCGATACTATGGGGAACAGCTTGACTACGGTCGAGATGTATAATTCCGAGACTCACGATTGGCTTACTTTACCGAGCATGAACAAACCGAGGAA GATGTGTTCCGCGGTGTTCATGGACGGGAAATTCTACGTTATCGGTGGAATCAGTGCCAATAGCGACGATGTGCTCACCTGCAGTGAAGTTTACGACTTG GAAGCGAGGACTTGGACCGAGATTCCCAACATGTCTCCCGGGAGGAATCCCGTTGTTCAGGAAGGAGTGCCCAGAGCTGCAGGGGCCCCACCGTTGCTTG CTGTGGTGAATAACCAGTTATATAACGCTGATCCTAACGATTTGGAGGTGAAGAAGTATGACAAGGAAAGGAGAGAGTGGATCGCGGTGGGGAGGCTCCC GGAACGTGCTCGCTCGATGAATGGTTGGGGGCTTGCGTTCAGGGCTTGTGGAGACCAGCTCATAGTCATTGGTGGACCTAGGACCCCCGGTGCAGGGTTT ATCGAGCTGAACTCGTGGGTTCCGAGCGAAGGTGGACCTCCACATTGGGACCTTCTCGCGAGGAAGCAATCGGTTAATTTCGTCTATAATTGTGCCGTCA TGGGTTGCTGA
AA sequence Show only first row Show all	>Lus10030489 pacid=23140670 polypeptide=Lus10030489 locus=Lus10030489.g ID=Lus10030489.BGIv1.0 annot-version=v1.0 MLEGRSCDSCMVTRVFGGSSCQSESQWNFMNYRSGSSSKHSLEDSEDDFRLSKSRRILSNVIIEQADEAADDDGNDQAGQSSNSDPLIDPIGRDISIDCF IKNSRSDYGSLASVNRSFRNLFRSGEIYKLRRLRGVIEHWVYFSCHLLEWEAFDPIRRRWMHLPRMPSNECFMCSDKESLAVGTELLVFGKEVMSYVIYR YSILTNSWSTGMTMNSPRCLFGSASLGEIAIFAGGCDTMGNSLTTVEMYNSETHDWLTLPSMNKPRKMCSAVFMDGKFYVIGGISANSDDVLTCSEVYDL EARTWTEIPNMSPGRNPVVQEGVPRAAGAPPLLAVVNNQLYNADPNDLEVKKYDKERREWIAVGRLPERARSMNGWGLAFRACGDQLIVIGGPRTPGAGF IELNSWVPSEGGPPHWDLLARKQSVNFVYNCAVMGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02870			Galactose oxidase/kelch repeat...		Lus10030489 [exp]	0	1
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Lus10028713 [exp]	4.0	0.8600
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Lus10006054 [exp]	4.2	0.8681
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10029242 [exp]	4.9	0.8807
AT3G01170			Ribosomal protein L34e superfa...		Lus10030686 [exp]	5.1	0.8829
AT5G61430	NAC	ANAC100, ATNAC5	NAC domain containing protein ...		Lus10021659 [exp]	6.3	0.8869
AT5G11520		YLS4, ASP3	YELLOW-LEAF-SPECIFIC GENE 4, a...		Lus10022137 [exp]	7.7	0.8533
AT3G11810			unknown protein		Lus10037134 [exp]	19.3	0.8723
AT1G80700			unknown protein		Lus10002322 [exp]	22.5	0.8007
AT3G52730			ubiquinol-cytochrome C reducta...		Lus10021364 [exp]	25.7	0.8186
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10003055 [exp]	25.7	0.8443

Compare expression of checked genes

Lus10030489 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.