Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28857 98 / 3e-28 bHLH PRE5 Paclobutrazol Resistance 5, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G39860 96 / 4e-27 bHLH BNQ1, BHLH136, PRE1 PACLOBUTRAZOL RESISTANCE1, BANQUO 1, BASIC HELIX-LOOP-HELIX PROTEIN 136, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT1G26945 91 / 3e-25 bHLH KDR, PRE6 KIDARI, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G15160 88 / 5e-24 bHLH BNQ2, BHLH134, PRE2 BASIC HELIX-LOOP-HELIX PROTEIN 134, BANQUO 2 (.1) AT3G47710 85 / 4e-23 bHLH BNQ3, PRE4, bHLH161 BASIC HELIX-LOOP-HELIX PROTEIN 161, BANQUO 3 (.1) AT1G74500 84 / 2e-22 bHLH TMO7, PRE3, ATBS1, bHLH135 TARGET OF MONOPTEROS 7, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012842 [exp] 145 / 1e-46 AT3G28857 103 / 3e-30 Paclobutrazol Resistance 5, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10036732 [exp] 115 / 5e-35 AT1G26945 115 / 6e-35 KIDARI, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10037198 [exp] 112 / 9e-34 AT1G26945 114 / 1e-34 KIDARI, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10024241 [exp] 79 / 2e-20 AT3G47710 123 / 2e-38 BASIC HELIX-LOOP-HELIX PROTEIN 161, BANQUO 3 (.1) Lus10023610 [exp] 76 / 5e-19 AT3G28857 109 / 9e-33 Paclobutrazol Resistance 5, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10008626 [exp] 59 / 2e-12 AT3G28857 71 / 1e-17 Paclobutrazol Resistance 5, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030675 [exp] 37 / 0.0003 AT3G28857 61 / 8e-14 Paclobutrazol Resistance 5, basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G081300 [exp] 97 / 7e-28 AT5G39860 126 / 1e-39 PACLOBUTRAZOL RESISTANCE1, BANQUO 1, BASIC HELIX-LOOP-HELIX PROTEIN 136, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.004G128400 [exp] 94 / 2e-26 AT5G39860 124 / 8e-39 PACLOBUTRAZOL RESISTANCE1, BANQUO 1, BASIC HELIX-LOOP-HELIX PROTEIN 136, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.015G063300 [exp] 87 / 8e-24 AT1G74500 75 / 3e-19 TARGET OF MONOPTEROS 7, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 (.1) Potri.012G069500 [exp] 82 / 1e-21 AT1G74500 81 / 2e-21 TARGET OF MONOPTEROS 7, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10030490 pacid=23140668 polypeptide=Lus10030490 locus=Lus10030490.g ID=Lus10030490.BGIv1.0 annot-version=v1.0 ATGCCGAGCACTAGAAGATCATCTTCATCCCGATCAAGACACTCGACGACAACGACGAGGCCTAATGTCATCTCTGACGACCAGATCATTGATCTCATTT CGAAACTTCAGCGACTCGTCCCAGAGGCTCATTCCACCTCTCGTTGCTCTCGTGGCAAGGGTTCGACATCGAAGGTGTTGCAGGAGACGTGCAACTACAT AAAGGAGTTGAACAAGCAGGTGGACGATCTGAGCGGAAAGTTGTCGGAGCTATTGGCCTCCATAGATTCCGACAGCGACCAAGCTGCCATCATTAGGAGC TTGCTCATGTAG
AA sequence Show only first row Show all	>Lus10030490 pacid=23140668 polypeptide=Lus10030490 locus=Lus10030490.g ID=Lus10030490.BGIv1.0 annot-version=v1.0 MPSTRRSSSSRSRHSTTTTRPNVISDDQIIDLISKLQRLVPEAHSTSRCSRGKGSTSKVLQETCNYIKELNKQVDDLSGKLSELLASIDSDSDQAAIIRS LLM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28857	bHLH	PRE5	Paclobutrazol Resistance 5, ba...		Lus10030490 [exp]	0	1
AT5G54740		SESA5	seed storage albumin 5 (.1)		Lus10023513 [exp]	12.0	0.9719
AT3G09790		UBQ8	ubiquitin 8 (.1)		Lus10022258 [exp]	17.1	0.9715
AT3G28857	bHLH	PRE5	Paclobutrazol Resistance 5, ba...		Lus10012842 [exp]	21.8	0.9677
AT5G14400		CYP724A1	"cytochrome P450, family 724, ...		Lus10025183 [exp]	22.0	0.8872
AT1G10740			alpha/beta-Hydrolases superfam...		Lus10030585 [exp]	25.8	0.9537
AT1G18400	bHLH	bHLH044, BEE1	BR enhanced expression 1 (.1)		Lus10033562 [exp]	26.2	0.9657
AT2G24180		CYP71B6	cytochrome p450 71b6 (.1)		Lus10017697 [exp]	29.3	0.9650
AT4G16515		RGF6	root meristem growth factor 6,...		Lus10008506 [exp]	30.8	0.9648
AT4G09960	MADS	AGL11, STK	SEEDSTICK, AGAMOUS-like 11, K-...		Lus10005302 [exp]	32.9	0.9568
AT4G34770			SAUR-like auxin-responsive pro...		Lus10012185 [exp]	34.5	0.9648

Compare expression of checked genes

Lus10030490 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.