Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14340 288 / 1e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G01210 169 / 7e-52 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G17720 153 / 6e-45 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G16840 150 / 1e-44 BPA1 binding partner of acd11 1 (.1.2.3) AT5G46870 150 / 3e-44 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G32450 146 / 1e-42 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT1G67950 123 / 1e-33 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012843 [exp] 452 / 1e-163 AT1G14340 301 / 5e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10007254 [exp] 221 / 3e-67 AT1G14340 244 / 2e-75 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10030952 [exp] 154 / 2e-45 AT4G17720 382 / 7e-134 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10040095 [exp] 152 / 7e-45 AT4G17720 379 / 8e-133 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10011063 [exp] 149 / 3e-43 AT4G17720 333 / 2e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10000676 [exp] 141 / 2e-40 AT4G17720 313 / 1e-106 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10025743 [exp] 140 / 4e-40 AT4G17720 295 / 4e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10013651 [exp] 136 / 2e-37 AT5G32450 343 / 5e-117 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10010660 [exp] 133 / 4e-37 AT5G32450 352 / 3e-122 RNA binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G081500 [exp] 278 / 3e-95 AT1G14340 239 / 6e-80 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.017G081400 [exp] 263 / 1e-88 AT1G14340 229 / 3e-75 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.013G055100 [exp] 154 / 1e-45 AT5G32450 389 / 9e-138 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.019G037600 [exp] 151 / 1e-44 AT5G32450 400 / 2e-142 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G138400 [exp] 150 / 4e-44 AT4G17720 365 / 2e-127 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.003G095400 [exp] 141 / 6e-41 AT4G17720 355 / 9e-124 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G103600 [exp] 129 / 7e-36 AT1G67950 280 / 6e-94 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.001G070200 [exp] 48 / 1e-06 AT5G32450 65 / 8e-13 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G009800 [exp] 44 / 8e-05 AT5G09880 519 / 9e-180 Splicing factor, CC1-like (.1) Potri.004G177000 [exp] 41 / 0.0004 AT2G16940 538 / 0.0 Splicing factor, CC1-like (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10030491 pacid=23140781 polypeptide=Lus10030491 locus=Lus10030491.g ID=Lus10030491.BGIv1.0 annot-version=v1.0 ATGAGTGAAGAAGGTGGGTATGTGGTTGAAGTTACGGGGCTGTCACCCAAGGCAACGGAGAAAGATGTTCGTGACTTCTTCGCCTTCTCTGGCACAATTG ATAACATCGAAATCGTCAGGTCTGGTGATTATGCTGCTTGCACTGCTTATGTGACGTTTAGAGATGCCTACTCTCAGGAAACTGCTGTCCTGCTCAGTGG TGCCACCATTATGGATGAACGAGTGTGCATAACACGCTGGGGACGCTACGAGGACGAGTTCGATTTCTGGAACAAGCCTTCGACAACACCAACAGACCAC GAAAGCAATCAACCCCAAGGCACAACGGGCCAATTCCCGAGCAGTGCAGGAGAAGCAGTAAACAAGGCACAAGAAGTGGTCACGACAATGCTCTCAGTGG GATACGTGCTAGGCAAAGACGCACTGACCAAGGCGAAAGACTTCGACGAGTCTCATCAAGTCTCAGCCACCGCCACTGCAAAGGTATCCGAGTTCACCGA GAGGATCGGCCTAGCTGACAAGCTCTTTGCAGGGATGGAAGCTGTGAAATCCGTGGATGACAAGTACCATGTCTCCGAAACGACCAAGACAGCTGTGTCT GCTACGGCTAGATCAGCAGCATCAGCAGCTAACACTGTGATCAACAGTAGCTACTTCTCTAAGGGCGCTCTTTGGGTTTCGGGCGCTCTGAACCGAGCTG CGAATATTGCTTCTGATTTAGGCAGCAAGGGTGCTCAGCATTGA
AA sequence Show only first row Show all	>Lus10030491 pacid=23140781 polypeptide=Lus10030491 locus=Lus10030491.g ID=Lus10030491.BGIv1.0 annot-version=v1.0 MSEEGGYVVEVTGLSPKATEKDVRDFFAFSGTIDNIEIVRSGDYAACTAYVTFRDAYSQETAVLLSGATIMDERVCITRWGRYEDEFDFWNKPSTTPTDH ESNQPQGTTGQFPSSAGEAVNKAQEVVTTMLSVGYVLGKDALTKAKDFDESHQVSATATAKVSEFTERIGLADKLFAGMEAVKSVDDKYHVSETTKTAVS ATARSAASAANTVINSSYFSKGALWVSGALNRAANIASDLGSKGAQH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14340			RNA-binding (RRM/RBD/RNP motif...		Lus10030491 [exp]	0	1
AT1G17080			Ribosomal protein L18ae family...		Lus10005580 [exp]	2.2	0.8757
AT5G04460			RING/U-box superfamily protein...		Lus10028827 [exp]	2.6	0.8285
AT3G26100			Regulator of chromosome conden...		Lus10006455 [exp]	7.3	0.7895
AT4G16380			Heavy metal transport/detoxifi...		Lus10001913 [exp]	9.5	0.7938
AT5G50430		UBC33	ubiquitin-conjugating enzyme 3...		Lus10003932 [exp]	10.2	0.8446
AT3G21610			Acid phosphatase/vanadium-depe...		Lus10035299 [exp]	10.4	0.8351
AT1G17080			Ribosomal protein L18ae family...		Lus10013712 [exp]	11.0	0.8442
AT1G31300			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10018287 [exp]	11.2	0.8323
AT1G78620			Protein of unknown function DU...		Lus10038149 [exp]	15.9	0.7630
AT5G35460			unknown protein		Lus10017161 [exp]	17.3	0.8100

Compare expression of checked genes

Lus10030491 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.