Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02860 855 / 0 ATSUT2, ATSUC3, SUT2 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2) AT1G71890 405 / 4e-135 SUC5, ATSUC5 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) AT1G09960 396 / 1e-131 ATSUC4, SUC4, ATSUT4, SUT4 sucrose transporter 4 (.1) AT5G06170 237 / 1e-70 ATSUC9 sucrose-proton symporter 9 (.1) AT1G66570 231 / 2e-69 ATSUC7 sucrose-proton symporter 7 (.1.2.3) AT1G71880 230 / 6e-68 ATSUC1, SUC1 ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 1, sucrose-proton symporter 1 (.1) AT1G22710 227 / 8e-67 SUT1, ATSUC2, SUC2 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) AT5G43610 221 / 7e-65 ATSUC6 sucrose-proton symporter 6 (.1) AT2G14670 221 / 9e-65 ATSUC8 sucrose-proton symporter 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012844 [exp] 1022 / 0 AT2G02860 696 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2) Lus10032815 [exp] 440 / 1e-148 AT1G09960 694 / 0.0 sucrose transporter 4 (.1) Lus10028614 [exp] 390 / 6e-129 AT1G71890 603 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10029766 [exp] 390 / 1e-128 AT1G22710 655 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10007702 [exp] 383 / 1e-126 AT1G22710 588 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10018914 [exp] 383 / 4e-126 AT1G71890 593 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10017910 [exp] 379 / 2e-124 AT1G71890 693 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10018915 [exp] 379 / 2e-124 AT1G71890 616 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10028616 [exp] 377 / 6e-124 AT1G71890 617 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G148100 [exp] 919 / 0 AT2G02860 849 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2) Potri.010G093600 [exp] 891 / 0 AT2G02860 816 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2) Potri.002G106900 [exp] 416 / 3e-139 AT1G09960 674 / 0.0 sucrose transporter 4 (.1) Potri.019G085800 [exp] 221 / 3e-64 AT1G22710 645 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Potri.013G115200 [exp] 219 / 1e-63 AT1G22710 643 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030492 pacid=23140560 polypeptide=Lus10030492 locus=Lus10030492.g ID=Lus10030492.BGIv1.0 annot-version=v1.0 ATGGACGCGGTGTCGATTCGGGTGCCGTACAAGAACCTGAGGAAGGATGTTGAGGTGGAAATGGCGAGCGTGGGGGATGATGGGTCGTCGCCGAATCAGA GGATTGAGCTGGATTCTCCTGCTTATGGTCACTTGTCGGTGAATTCCGACGGTACCGACTCCAATTTCGCTTCGCCGACAGGTGAAGTCGGATCGCAGGC GCCGAAGCATTGTAGCTTGGTTTCTCTTGTTCTTAGTTGTACGGTGGCAGCCGGAGTGCAGTTCGGCTGGGCTCTGCAGCTGTCTCTTTTGACTCCGTAT ATCCAGACACTTGGAATAGAACACGCTTTCTCATCGTTTATTTGGCTCTGTGGCCCTATTACTGGCCTTGTGGTGCAACCTTGTGTGGGTATTTGGAGTG ATAAGTGCTCTTCCAAATATGGAAGAAGACGACCGTTTATTCTTGCAGGATCGCTGATGATCTCGATCGCTGTGATAATTATCGGATTTTCTGCAGACAT TGGTTATTTGTTAGGGGATACCAAGGAGCATTGCAGTACATTCAAAGGGACTCGAACTAGGGCGGCAATCATCTTTGTTATTGGTTTCTGGATGCTGGAT CTTGCTAATAATACGGTTCAGGGACCAGCTCGAGCTCTTCTAGCTGATTTTGCAGGTGAATTCTACATAAGCTTTCTGTGCCATCTTCTTTTGTATTTGT ACCTCTCATCTCACAGTTTTCTAATGGGGAAAGACAGCGAGGGCCCTGATCAACGCAATACCGCCAATGCTATATTTTGCTTATGGATGGCTGTTGGAAA CATACTTGGATTTTCTGCTGGTGCTAGTGGCAGCTGGAACAGGTGGTTTCCTTTTCTAATGAGTAGAGCTTGTTGTGAAGCTTGTGGAAATCTTAAAGCA GCATTTCTTGTAGCCGTGGTATTCCTAACCTTCTGTACACTTGTGACCCTGTATTTCGCGGATGAAATCCCACTGAGTGCAAATCAGCCTCATAAAGCAT CAGACTCTGCTCCATTATTGCACAGTAGCAAACAAAATGGCATCGAACTATCAAAATTTGATTCTCAAGATCAGCATATGGGAAATCCTAGTGCCAACGG TATTCGAAATGGGTATGAAAAGCTTAATGTTCGTAATCATGCCAACCCCGTGGATGATTCCAGTGACAGTCTTGATGATGGCCCTGGAGCAGTTATGGTT AAATTGCTGACCAGTTTAAGGCATTTGCCCCCTGGGATGCACGCCGTACTTGTTGTTATGGCTCTTACTTGGTTATCCTGGTTCCCCTTCTTTCTTTTTG ACACTGACTGGATGGGCAGAGAAGTCTATCATGGAGATCCCAAGGGGGATGCTAATGTAACTAACTTGTACGATCAAGGTGTCAGAGAAGGTGCATTTGG TTTGCTATTGAACTCAGTTGTTCTCGGCATCAGTTCTTTCCTTATCGAACCAATGTGTCATAAGTTCGGAGCACGACTCGTATGGGCGATGAGCAATTTC ATAGTCTTCGCCTGCATGGTCACTACTGCCATCATAAGTTTGGTATCTATGTCTCAATATTCTAAAGGAATTGAGCACATCATTGGTGTGAATTCCCCGA TCAAGATAGCTTCCTTAGTTGTATTCGCTCTTCTCGGATTTCCTCTAGCTATAACCTATAGCGTTCCATTCTCAGTCACAGCTCAGTTGACTGCTGATTC TGGTGGTGGTCAAGGGTTAGCAATCGGAGTCCTCAACCTCGCAATCGTCGTTCCTCAGATGATAGTATCCCTTGGTGCGGGACCATGGGACGCATTATTC GGTGGAGGCAACATACCAGCATTCGTCTTAGCTTCAATAAGCGCGCTTGCAGCCGGTGTGATTGCAACTCTCAAGCTCCCGAATCTCTCAAGCTCCTTCC AGTCAACCGGCATGCATTTTGGCTAG
AA sequence Show only first row Show all	>Lus10030492 pacid=23140560 polypeptide=Lus10030492 locus=Lus10030492.g ID=Lus10030492.BGIv1.0 annot-version=v1.0 MDAVSIRVPYKNLRKDVEVEMASVGDDGSSPNQRIELDSPAYGHLSVNSDGTDSNFASPTGEVGSQAPKHCSLVSLVLSCTVAAGVQFGWALQLSLLTPY IQTLGIEHAFSSFIWLCGPITGLVVQPCVGIWSDKCSSKYGRRRPFILAGSLMISIAVIIIGFSADIGYLLGDTKEHCSTFKGTRTRAAIIFVIGFWMLD LANNTVQGPARALLADFAGEFYISFLCHLLLYLYLSSHSFLMGKDSEGPDQRNTANAIFCLWMAVGNILGFSAGASGSWNRWFPFLMSRACCEACGNLKA AFLVAVVFLTFCTLVTLYFADEIPLSANQPHKASDSAPLLHSSKQNGIELSKFDSQDQHMGNPSANGIRNGYEKLNVRNHANPVDDSSDSLDDGPGAVMV KLLTSLRHLPPGMHAVLVVMALTWLSWFPFFLFDTDWMGREVYHGDPKGDANVTNLYDQGVREGAFGLLLNSVVLGISSFLIEPMCHKFGARLVWAMSNF IVFACMVTTAIISLVSMSQYSKGIEHIIGVNSPIKIASLVVFALLGFPLAITYSVPFSVTAQLTADSGGGQGLAIGVLNLAIVVPQMIVSLGAGPWDALF GGGNIPAFVLASISALAAGVIATLKLPNLSSSFQSTGMHFG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02860		ATSUT2, ATSUC3,...	ARABIDOPSIS THALIANA SUCROSE T...		Lus10030492 [exp]	0	1
AT1G77610			EamA-like transporter family p...		Lus10042700 [exp]	1.0	0.8959
AT1G03905		ABCI19	ATP-binding cassette I19, P-lo...		Lus10024914 [exp]	3.5	0.8056
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10028087 [exp]	3.5	0.8164
AT5G09890			Protein kinase family protein ...		Lus10042650 [exp]	9.8	0.7829
AT1G50120			unknown protein		Lus10013430 [exp]	9.9	0.7662
AT1G61850			phospholipases;galactolipases ...		Lus10007661 [exp]	10.5	0.8142
AT2G13560		NAD-ME1	NAD-dependent malic enzyme 1 (...		Lus10018939 [exp]	12.2	0.7734
AT4G32770		ATSDX1, VTE1	tocopherol cyclase, chloroplas...		Lus10009501 [exp]	13.6	0.7603
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Lus10021796 [exp]	15.6	0.7745
AT2G30350			Excinuclease ABC, C subunit, N...		Lus10042228 [exp]	16.5	0.7021

Compare expression of checked genes

Lus10030492 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.