Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69780 270 / 1e-90 HD ATHB13 Homeobox-leucine zipper protein family (.1) AT1G26960 234 / 4e-77 HD ATHB23 homeobox protein 23 (.1) AT3G01220 185 / 3e-57 HD ATHB20 homeobox protein 20 (.1) AT5G15150 177 / 4e-54 HD ATHB3, HAT7, ATHB-3 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) AT5G65310 142 / 2e-40 HD ATHB-5, ATHB5 homeobox protein 5 (.1.2) AT4G40060 137 / 7e-39 HD ATHB16 ,ATHB-16 homeobox protein 16 (.1) AT2G22430 135 / 7e-38 HD ATHB6 homeobox protein 6 (.1) AT3G01470 130 / 3e-36 HD HD-ZIP-1, HAT5, ATHB1, ATHB-1 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) AT2G46680 105 / 5e-27 HD ATHB7, ATHB-7 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) AT1G27045 103 / 2e-26 ATHB54 homeobox protein 54, Homeobox-leucine zipper protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012845 [exp] 506 / 0 AT1G69780 280 / 1e-94 Homeobox-leucine zipper protein family (.1) Lus10036730 [exp] 341 / 2e-118 AT1G69780 325 / 9e-112 Homeobox-leucine zipper protein family (.1) Lus10037200 [exp] 331 / 2e-114 AT1G69780 319 / 2e-109 Homeobox-leucine zipper protein family (.1) Lus10023159 [exp] 130 / 3e-36 AT4G40060 220 / 1e-70 homeobox protein 16 (.1) Lus10042180 [exp] 131 / 4e-36 AT3G01470 159 / 6e-47 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10036674 [exp] 128 / 3e-35 AT3G01470 153 / 8e-45 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10022225 [exp] 127 / 6e-35 AT3G01470 270 / 2e-90 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10008795 [exp] 125 / 2e-34 AT3G01470 261 / 3e-87 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10033102 [exp] 125 / 2e-34 AT3G01470 151 / 4e-44 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G148200 [exp] 318 / 1e-109 AT1G69780 333 / 6e-115 Homeobox-leucine zipper protein family (.1) Potri.010G093400 [exp] 300 / 6e-102 AT1G69780 308 / 5e-105 Homeobox-leucine zipper protein family (.1) Potri.017G081700 [exp] 243 / 1e-79 AT5G15150 248 / 5e-81 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) Potri.002G100600 [exp] 144 / 7e-42 AT4G40060 191 / 1e-59 homeobox protein 16 (.1) Potri.015G065400 [exp] 141 / 5e-40 AT3G01470 136 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.012G070900 [exp] 139 / 4e-39 AT3G01470 145 / 1e-41 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.005G071900 [exp] 135 / 1e-37 AT2G22430 248 / 6e-81 homeobox protein 6 (.1) Potri.005G161500 [exp] 133 / 1e-37 AT4G40060 187 / 4e-58 homeobox protein 16 (.1) Potri.007G097100 [exp] 134 / 2e-37 AT2G22430 250 / 9e-82 homeobox protein 6 (.1) Potri.008G194400 [exp] 121 / 1e-32 AT5G15150 122 / 1e-32 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02183 [flax] [poplar] HALZ Homeobox associated leucine zipper CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10030493 pacid=23140613 polypeptide=Lus10030493 locus=Lus10030493.g ID=Lus10030493.BGIv1.0 annot-version=v1.0 ATGGCATCATTCTTAGGGAAGAGATCCATGTCATGCTCCGGAATCAACGATGCCGCAAACAACAACAACAACTGCCATGACCAAGAAGGAGGAGGTTTGA TGAATGGAGAGGAGGACTTTTCAGACGACGGGTCGATGGCAGGGGAGAAGAAGAGGAGGCTGAACATGGAGCAAGTGAGGACGCTCGAGAAGAACTTTGA GCTCGCAAACAAGCTCGAGCCGGAGAGGAAAATGCAGCTCGCTAGAGCACTAGGACTCCAGCCTAGGCAGATTGCGATATGGTTTCAGAACAGGAGAGCC AGGTGGAAGACAAAACAGCTTGAGAAAGACTATGATGTCCTCAAAAGACAGTTTGAGGGTGTCAAGGCTGATAATGATTCTCTCCAGTCTCAGAACCAGA AGCTTCATGCTGAGATAATGGCACTGAAAGGGAGGGGACCAACACATGAAGCAATCAACCTGAACAAGGAGACAGAAGGGTCATGTAGCAACAGAAGTGA AAGCAGTTCAGATATCAAGCTAGATATCTCAAGGAGTAACACACCAGCAGCCATTGATAGTCCTCTTTCTAGCACTCCAAATGGGAGACCCTTTTTCCCC ACAACATCATCATCTCATCATCATAATGTTAGGCCACCATTAGTCCCAAGTAATGGTGTGGCACAACTTTTCCACAACAACTCAACGAGGCCACAATCGG CATCCGTGGATCAGATTGTCAAAGAAGAGAGCCTCACCACCATGTTCTGTGGCATCGACGACCAATCTGTTGGGTTCTGGCCCTGGCTCGAACCGCAACA CTTCAATTGA
AA sequence Show only first row Show all	>Lus10030493 pacid=23140613 polypeptide=Lus10030493 locus=Lus10030493.g ID=Lus10030493.BGIv1.0 annot-version=v1.0 MASFLGKRSMSCSGINDAANNNNNCHDQEGGGLMNGEEDFSDDGSMAGEKKRRLNMEQVRTLEKNFELANKLEPERKMQLARALGLQPRQIAIWFQNRRA RWKTKQLEKDYDVLKRQFEGVKADNDSLQSQNQKLHAEIMALKGRGPTHEAINLNKETEGSCSNRSESSSDIKLDISRSNTPAAIDSPLSSTPNGRPFFP TTSSSHHHNVRPPLVPSNGVAQLFHNNSTRPQSASVDQIVKEESLTTMFCGIDDQSVGFWPWLEPQHFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Lus10030493 [exp]	0	1
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Lus10012845 [exp]	1.0	0.9430
AT5G50335			unknown protein		Lus10001469 [exp]	2.8	0.9225
AT1G74160			unknown protein		Lus10034678 [exp]	3.7	0.8930
AT5G12250		TUB6	beta-6 tubulin (.1)		Lus10008528 [exp]	4.9	0.9106
AT3G24670			Pectin lyase-like superfamily ...		Lus10022817 [exp]	5.5	0.9141
AT5G23730		EFO2, RUP2	REPRESSOR OF UV-B PHOTOMORPHOG...		Lus10027454 [exp]	5.8	0.8665
AT3G19360	C3HZnF		Zinc finger (CCCH-type) family...		Lus10043287 [exp]	6.5	0.8769
AT5G50335			unknown protein		Lus10008207 [exp]	7.2	0.8780
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10024388 [exp]	7.7	0.9039
AT2G28100		ATFUC1	alpha-L-fucosidase 1 (.1)		Lus10031681 [exp]	8.2	0.8363

Compare expression of checked genes

Lus10030493 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.