Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14360 587 / 0 ATUTR3, UTR3 UDP-galactose transporter 3 (.1) AT2G02810 570 / 0 ATUTR1, UTR1 UDP-galactose transporter 1 (.1) AT3G46180 124 / 9e-33 UTR5, ATUTR5 UDP-galactose transporter 5 (.1) AT5G59740 120 / 2e-31 UDP-N-acetylglucosamine (UAA) transporter family (.1) AT1G12600 83 / 9e-18 UDP-N-acetylglucosamine (UAA) transporter family (.1) AT4G23010 75 / 5e-15 ATUTR2, UTR2 UDP-galactose transporter 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012848 [exp] 660 / 0 AT1G14360 570 / 0.0 UDP-galactose transporter 3 (.1) Lus10005881 [exp] 125 / 6e-33 AT5G59740 573 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10040866 [exp] 92 / 3e-21 AT5G59740 479 / 8e-172 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10029605 [exp] 81 / 8e-17 AT1G12600 556 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10006337 [exp] 81 / 9e-17 AT1G12600 555 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10009315 [exp] 78 / 8e-16 AT1G12600 557 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10015850 [exp] 74 / 8e-15 AT1G12600 484 / 1e-173 UDP-N-acetylglucosamine (UAA) transporter family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G139100 [exp] 563 / 0 AT1G14360 560 / 0.0 UDP-galactose transporter 3 (.1) Potri.006G110500 [exp] 550 / 0 AT1G14360 538 / 0.0 UDP-galactose transporter 3 (.1) Potri.001G234800 [exp] 122 / 7e-32 AT5G59740 556 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Potri.003G121000 [exp] 79 / 2e-16 AT4G23010 527 / 0.0 UDP-galactose transporter 2 (.1.2.3) Potri.001G111000 [exp] 77 / 8e-16 AT4G23010 527 / 0.0 UDP-galactose transporter 2 (.1.2.3) Potri.014G077500 [exp] 77 / 9e-16 AT1G12600 566 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF08449 [flax] [poplar] UAA UAA transporter family
Representative CDS sequence Show only first row Show all	>Lus10030495 pacid=23140605 polypeptide=Lus10030495 locus=Lus10030495.g ID=Lus10030495.BGIv1.0 annot-version=v1.0 ATGGAGGCACACGGCGCCGGGTCTCGACGAGTGTTTCTGTTGGCGTTTTGCATCGCCGGGATCTGGTCCGCATACATTTACCAAGGGGTCCTTCAGGAAA CTCTATCCACCAAGCGATTTGGTCCAGATGGGGAGCGTTTTGAGCACTTGGCGTTTCTTAATCTGGCGCAGAGTGTCGTCTGCTTGATTTGGTCTTACAT GATGATTAAGATATGGTCTAGAAGTAGCGAAGGTGGTGCACCCTGGTGGTCGTATTGGAGTGCCGGCATTACTAACACGATTGGTCCGGCTATGGGGATT GAAGCTTTGAAGTACATTAGCTATCCAGCTCAGGTTCTCGCGAAATCTTCGAAGATGATTCCAGTTATGTTGATGGGGAGTCTAGTATATGGCATAAGAT ATACCATTCCAGAGTATTTGTGTACTTTCCTCGTCGCAGGAGGGGTATCTACGTTTGCGCTATTGAAGACCAGCTCAAAAACCATTAGCAAGTTGGCTAA TCCTAATGCTCCTCTTGGATACGGCCTTTGCTTCTTGAACCTTGCATTCGATGGATTTACAAACGCCACCCAGGATTCGCTTACTGCAAGGTATCCGAAG ACTACTGCATGGGACATCATGTTGGGAATGAACTTATGGGGCACCATATACAACGTGCTCTACATGTTCGGTTGGCCACATGGCATGGGATACGACGCGG TCCAGTTCTGCAAGCAGCATCCCGAGGCAGCATGGGACATCCTCTACTACTGCCTGTGCGGTGCAGTAGGCCAGAACTTCATCTTCCTAACGATAAGCCG GTTCGGGTCACTTGCCAACCCCACCATCACCACCACCCGCAAGTTCATGAGCATCGTGATTTCGGCTGTTCTGAGTGGCAACCCTCTATCTCCGAAGCAA TGGGGGTCGGTACCCATGGTCTTCTCCGGCCTGTCGTACCAGATCTTTCTCAAGTGGAGAAAGTTGCAGAAGGTGGCCCAGAAGAAGAGGAAGAACACTT GA
AA sequence Show only first row Show all	>Lus10030495 pacid=23140605 polypeptide=Lus10030495 locus=Lus10030495.g ID=Lus10030495.BGIv1.0 annot-version=v1.0 MEAHGAGSRRVFLLAFCIAGIWSAYIYQGVLQETLSTKRFGPDGERFEHLAFLNLAQSVVCLIWSYMMIKIWSRSSEGGAPWWSYWSAGITNTIGPAMGI EALKYISYPAQVLAKSSKMIPVMLMGSLVYGIRYTIPEYLCTFLVAGGVSTFALLKTSSKTISKLANPNAPLGYGLCFLNLAFDGFTNATQDSLTARYPK TTAWDIMLGMNLWGTIYNVLYMFGWPHGMGYDAVQFCKQHPEAAWDILYYCLCGAVGQNFIFLTISRFGSLANPTITTTRKFMSIVISAVLSGNPLSPKQ WGSVPMVFSGLSYQIFLKWRKLQKVAQKKRKNT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14360		ATUTR3, UTR3	UDP-galactose transporter 3 (....		Lus10030495 [exp]	0	1
AT1G14360		ATUTR3, UTR3	UDP-galactose transporter 3 (....		Lus10012848 [exp]	1.0	0.9422
AT1G04980		ATPDI10, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10031522 [exp]	1.4	0.9146
AT2G34250			SecY protein transport family ...		Lus10029262 [exp]	1.7	0.8720
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10026404 [exp]	5.7	0.8692
AT2G45600			alpha/beta-Hydrolases superfam...		Lus10009308 [exp]	5.7	0.8138
AT5G40150			Peroxidase superfamily protein...		Lus10014517 [exp]	6.3	0.8529
AT3G51790		ATG1	transmembrane protein G1P-rela...		Lus10031835 [exp]	7.0	0.8377
AT5G40150			Peroxidase superfamily protein...		Lus10032170 [exp]	7.5	0.8357
AT4G25680			PPPDE putative thiol peptidase...		Lus10039275 [exp]	10.4	0.8420
AT3G08970		TMS1, ATERDJ3A	THERMOSENSITIVE MALE STERILE 1...		Lus10003380 [exp]	15.2	0.8273

Compare expression of checked genes

Lus10030495 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.