Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02800 544 / 0 Kin2, APK2B protein kinase 2B (.1.2) AT1G14370 509 / 0 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1) AT1G69790 483 / 4e-171 Protein kinase superfamily protein (.1) AT1G26970 480 / 1e-169 Protein kinase superfamily protein (.1) AT2G28930 448 / 4e-157 APK1B protein kinase 1B (.1.2.3) AT1G07570 445 / 6e-156 APK1A Protein kinase superfamily protein (.1.2.3) AT5G02290 436 / 7e-153 NAK Protein kinase superfamily protein (.1.2) AT2G39660 408 / 1e-141 BIK1 botrytis-induced kinase1 (.1) AT1G74490 404 / 7e-140 Protein kinase superfamily protein (.1) AT3G55450 397 / 1e-137 PBL1 PBS1-like 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012850 [exp] 632 / 0 AT2G02800 614 / 0.0 protein kinase 2B (.1.2) Lus10042192 [exp] 472 / 4e-166 AT2G02800 479 / 3e-168 protein kinase 2B (.1.2) Lus10008627 [exp] 465 / 5e-161 AT2G02800 475 / 6e-164 protein kinase 2B (.1.2) Lus10024391 [exp] 440 / 6e-154 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 438 / 3e-153 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023794 [exp] 435 / 1e-152 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10002697 [exp] 434 / 7e-152 AT1G07570 543 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10000954 [exp] 433 / 1e-151 AT1G07570 535 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10040806 [exp] 434 / 2e-151 AT2G28930 573 / 0.0 protein kinase 1B (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G093700 [exp] 577 / 0 AT2G02800 627 / 0.0 protein kinase 2B (.1.2) Potri.008G148000 [exp] 565 / 0 AT2G02800 604 / 0.0 protein kinase 2B (.1.2) Potri.009G031300 [exp] 450 / 4e-158 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.001G240400 [exp] 449 / 9e-158 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.008G056400 [exp] 444 / 1e-155 AT1G07570 528 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.016G094300 [exp] 439 / 1e-153 AT1G07570 540 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G203400 [exp] 434 / 1e-151 AT2G28930 540 / 0.0 protein kinase 1B (.1.2.3) Potri.009G020700 [exp] 415 / 3e-144 AT1G14370 446 / 7e-156 PBS1-like 2, kinase 1, protein kinase 2A (.1) Potri.004G129000 [exp] 393 / 1e-134 AT5G15080 659 / 0.0 Protein kinase superfamily protein (.1) Potri.017G077300 [exp] 393 / 2e-134 AT5G15080 690 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10030496 pacid=23140632 polypeptide=Lus10030496 locus=Lus10030496.g ID=Lus10030496.BGIv1.0 annot-version=v1.0 ATGGGGAACTGCTTAGATTCTTCTGCTAAAGTTGATGCTACTCTCAGCTCTCATAATATCCCTTCTGGACCAGGAGGCTCAAGAATTTCGAGTAAAACCA GCAGCCAGTCATCTGGTCCATCAACTCTGACCATTCCATCATCATATAGCGAGAGGAGCTCCGATTTCCTGCCTACACCTCGAACCGAAGGCGAAATACT GTCATCACCAAACTTAAAGGCCTTTACTTTCAGTGAGTTGAGGAATGCCACAAGGAATTTCCGGCCCGATAGCCTCCTAGGTGAAGGTGGATTCGGATAC GTGTTCAAAGGCTGGATCGATGAGATTACGTTGACCGCTGCAAAGCCTGGATCCGGTATCGTTATCGCTGTCAAGAAGCTTAAACCCGAAGGCTTCCAGG GCCACAAGGAATGGCTGACGGAAGTTAACTATCTTGGCCAACTTCACCATCCTAATTTGGTTAAACTGATTGGATATTGCCTTGAGGGCGAGAATCGGCT TTTGGTTTACGAGTTCATGCCCAAAGGGAGTCTGGAGAATCATCTGTTTAGAAGAGGGCCAGACCCACTCCCATGGGCAGTGAGAATGAAGGTTGCTATA GGTGCAGCTAGAGGGCTCTCTTTCCTTCATGATGCAGAGTCACAAGTCATCTACCGCGATTTCAAGGCTTCGAATATTCTTCTAGATGCGGATTACAATG CCAGGCTGCCCGACTTGGGCTTGGCCAAGGCCGGCCCCACGGGGGACAGAACACACGTCTCGACTCAGGTCATGGGTACGCAAGGGTACGCAGCTCCTGA ATACGTCGCCACAGGTCGTCTCACATGCAAGAGCGACGTGTACAGCTTTGGAGTGGTGCTGCTCGAGCTGCTATCGGGGAGGCGAGCTGTGGACAAAACG AAAGTCGGGGTGGAGCAGATTCTCGTAGACTGGGCGAAGCCTTACCTGAGCGACAAACGGAAGCTGTTCCGGATCATGGACACGAAGTTGGGAGGTCAGT ACCCGCAGAAATCCGCCATAACAGCAGCCACAGAAATCAGCCATAACAGCAGCTCACTTGGCGTTTCAGTGCTTGAACAACGAGGCGAAACTCAGGCCCC GGATGTCGGAGGTGCTTGCTGCTTTGGAAACGATCGAGTCCCCGAAGGCTAG
AA sequence Show only first row Show all	>Lus10030496 pacid=23140632 polypeptide=Lus10030496 locus=Lus10030496.g ID=Lus10030496.BGIv1.0 annot-version=v1.0 MGNCLDSSAKVDATLSSHNIPSGPGGSRISSKTSSQSSGPSTLTIPSSYSERSSDFLPTPRTEGEILSSPNLKAFTFSELRNATRNFRPDSLLGEGGFGY VFKGWIDEITLTAAKPGSGIVIAVKKLKPEGFQGHKEWLTEVNYLGQLHHPNLVKLIGYCLEGENRLLVYEFMPKGSLENHLFRRGPDPLPWAVRMKVAI GAARGLSFLHDAESQVIYRDFKASNILLDADYNARLPDLGLAKAGPTGDRTHVSTQVMGTQGYAAPEYVATGRLTCKSDVYSFGVVLLELLSGRRAVDKT KVGVEQILVDWAKPYLSDKRKLFRIMDTKLGGQYPQKSAITAATEISHNSSSLGVSVLEQRGETQAPDVGGACCFGNDRVPEG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10030496 [exp]	0	1
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Lus10040620 [exp]	1.0	0.9167
AT1G52320			unknown protein		Lus10035887 [exp]	2.4	0.8784
AT2G20900		DGK5, ATDGK5	diacylglycerol kinase 5 (.1.2....		Lus10033732 [exp]	6.9	0.8756
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10014925 [exp]	8.8	0.8646
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10000225 [exp]	9.4	0.8487
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Lus10029747 [exp]	10.9	0.8356
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10011442 [exp]	12.6	0.8533
AT2G32190			unknown protein		Lus10010460 [exp]	15.7	0.8748
AT3G51630		ATWNK5, ZIK1, W...	with no lysine (K) kinase 5 (....		Lus10022747 [exp]	16.0	0.8366
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10035419 [exp]	16.4	0.8255

Compare expression of checked genes

Lus10030496 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.