Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47810 346 / 2e-123 ATVPS29, MAG1 VACUOLAR PROTEIN SORTING 29, MAIGO 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012851 [exp] 380 / 5e-137 AT3G47810 347 / 6e-124 VACUOLAR PROTEIN SORTING 29, MAIGO 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G354000 [exp] 352 / 6e-126 AT3G47810 340 / 6e-121 VACUOLAR PROTEIN SORTING 29, MAIGO 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3) Potri.011G077900 [exp] 350 / 3e-125 AT3G47810 338 / 3e-120 VACUOLAR PROTEIN SORTING 29, MAIGO 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030497 pacid=23140727 polypeptide=Lus10030497 locus=Lus10030497.g ID=Lus10030497.BGIv1.0 annot-version=v1.0 ATGGTGTTGGTTTTAGCTATAGGAGACCTTCATATATCCCACAGGGCAGCTGATCTGCCTCCGAAGTTCAAGTCCATGCTTGTTCCTGGCAAGATCCAGC ATATCATTTGCACTGGCAATCTCTGTATCAAAGAGGTGCATGACTACTTGAAGAGTTTATGTCCTGATTTGCACATCACAAGAGGAGAATACGACGAAGA CTCGCGCTATCCAGAGACAAAGACACTCACCATCGGCCAATTCAAGCTCGGAATATGCCATGGCCATCAGGTTATTCCATGGGGAGACCTGGACTCACTG GCCATGCTACAAAGGCAACTCGACGTGGACATCCTAGTAACAGGCCACACACACCAGTTCAAAGCCTACAAACACGAAGGTGGCGTTGTGATTAATCCGG GCTCCGCCACTGGCGCCTACAGTAGCTTCACCTCCGATGTGAACCCGAGCTTTGTACTCATGGACATCGATGGTTTACGTGTCGTGGTGTACGTATACGA GCTAATCGACGGCGAGGTAAAGGTCGACAAGATTGACTTCAAGAAGACTGCCAATCCTCGGTGA
AA sequence Show only first row Show all	>Lus10030497 pacid=23140727 polypeptide=Lus10030497 locus=Lus10030497.g ID=Lus10030497.BGIv1.0 annot-version=v1.0 MVLVLAIGDLHISHRAADLPPKFKSMLVPGKIQHIICTGNLCIKEVHDYLKSLCPDLHITRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSL AMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTSDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKTANPR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47810		ATVPS29, MAG1	VACUOLAR PROTEIN SORTING 29, M...		Lus10030497 [exp]	0	1
AT2G42210		ATOEP16-3	Mitochondrial import inner mem...		Lus10016278 [exp]	1.0	0.9476
AT5G52840			NADH-ubiquinone oxidoreductase...		Lus10039296 [exp]	1.4	0.9291
AT4G33410		ATSPPL1	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10027484 [exp]	3.5	0.9068
AT4G40042			Microsomal signal peptidase 12...		Lus10015793 [exp]	5.5	0.9196
AT5G58710		ROC7	rotamase CYP 7 (.1)		Lus10040666 [exp]	7.0	0.9115
AT3G12260			LYR family of Fe/S cluster bio...		Lus10026163 [exp]	7.5	0.8994
AT4G37830			cytochrome c oxidase-related (...		Lus10019250 [exp]	7.7	0.9283
AT4G00860		AT0ZI1, ATOZI1	Arabidopsis thaliana ozone-ind...		Lus10007542 [exp]	8.7	0.9201
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Lus10039164 [exp]	9.2	0.9205
AT3G03100			NADH:ubiquinone oxidoreductase...		Lus10030358 [exp]	9.5	0.8997

Compare expression of checked genes

Lus10030497 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.